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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170012609
ASRM01001946
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
32
107
+
Lys
TTT
[ENA]
¢þ
>WENV170012638
ASRM01010648
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
40
116
+
Ile
GAT
[ENA]
¢þ
>WENV170012631
ASRM01007410
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
51
126
+
His
GTG
[ENA]
¢þ
>WENV170012643
ASRM01015191
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
53
129
+
Arg
CCT
[ENA]
¢þ
>WENV170012586
ASRM01000075
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
63
151
+
Ser
TGA
[ENA]
¢þ
>WENV170012649
ASRM01019543
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
64
140
+
Val
TAC
[ENA]
¢þ
>WENV170012628
ASRM01005531
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
76
2
-
Gln
TTG
[ENA]
¢þ
>WENV170012624
ASRM01004914
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
104
188
+
Tyr
GTA
[ENA]
¢þ
>WENV170012640
ASRM01012517
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
112
183
+
Asn
GTT
[ENA]
¢þ
>WENV170012600
ASRM01001118
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
126
51
-
Asn
GTT
[ENA]
¢þ
>WENV170012646
ASRM01015706
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
133
57
-
Thr
TGT
[ENA]
¢þ
>WENV170012591
ASRM01000343
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
162
86
-
Arg
CCG
[ENA]
¢þ
>WENV170012626
ASRM01005205
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
163
73
-
Ser
GCT
[ENA]
¢þ
>WENV170012582
ASRM01000044
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
169
79
-
Ser
GCT
[ENA]
¢þ
>WENV170012636
ASRM01008848
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
170
94
-
Ile
GAT
[ENA]
¢þ
>WENV170012604
ASRM01001488
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
175
100
-
Ala
GGC
[ENA]
¢þ
>WENV170012632
ASRM01007410
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
176
260
+
Leu
TAG
[ENA]
¢þ
>WENV170012641
ASRM01012517
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
194
265
+
Glu
TTC
[ENA]
¢þ
>WENV170012644
ASRM01015274
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
200
273
+
Val
GAC
[ENA]
¢þ
>WENV170012622
ASRM01004522
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
210
134
-
Val
GAC
[ENA]
¢þ
>WENV170012625
ASRM01004914
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
213
296
+
Leu
TAG
[ENA]
¢þ
>WENV170012650
ASRM01020806
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
225
149
-
Ala
TGC
[ENA]
¢þ
>WENV170012614
ASRM01002911
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
232
148
-
Leu
GAG
[ENA]
¢þ
>WENV170012647
ASRM01017686
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
233
141
-
Ser
GCT
[ENA]
¢þ
>WENV170012605
ASRM01001514
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
236
146
-
Ser
GCT
[ENA]
¢þ
>WENV170012633
ASRM01008040
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
252
176
-
Arg
CCT
[ENA]
¢þ
>WENV170012642
ASRM01013916
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
257
181
-
Ile
GAT
[ENA]
¢þ
>WENV170012648
ASRM01018229
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
280
206
-
Asn
GTT
[ENA]
¢þ
>WENV170012612
ASRM01002482
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
299
385
+
Leu
CAG
[ENA]
¢þ
>WENV170012645
ASRM01015706
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
318
242
-
Met
CAT
[ENA]
¢þ
>WENV170012639
ASRM01011919
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
326
399
+
Ile
GAT
[ENA]
¢þ
>WENV170012637
ASRM01009216
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
344
420
+
Gly
TCC
[ENA]
¢þ
>WENV170012619
ASRM01004116
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
388
472
+
Tyr
GTA
[ENA]
¢þ
>WENV170012635
ASRM01008125
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
443
517
+
Thr
GGT
[ENA]
¢þ
>WENV170012634
ASRM01008055
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
458
382
-
His
GTG
[ENA]
¢þ
>WENV170012620
ASRM01004116
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
492
565
+
Gly
TCC
[ENA]
¢þ
>WENV170012606
ASRM01001698
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
524
450
-
Gln
TTG
[ENA]
¢þ
>WENV170012629
ASRM01005616
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
548
623
+
Val
TAC
[ENA]
¢þ
>WENV170012621
ASRM01004116
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
585
660
+
Thr
GGT
[ENA]
¢þ
>WENV170012630
ASRM01005704
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
596
520
-
Trp
CCA
[ENA]
¢þ
>WENV170012618
ASRM01003822
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
597
673
+
Met
CAT
[ENA]
¢þ
>WENV170012627
ASRM01005511
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
619
544
-
Lys
TTT
[ENA]
¢þ
>WENV170012623
ASRM01004566
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
646
573
-
Cys
GCA
[ENA]
¢þ
>WENV170012616
ASRM01003534
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
668
584
-
Leu
TAA
[ENA]
¢þ
>WENV170012607
ASRM01001768
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
672
597
-
Phe
GAA
[ENA]
¢þ
>WENV170012617
ASRM01003603
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
705
779
+
Phe
GAA
[ENA]
¢þ
>WENV170012588
ASRM01000124
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
729
653
-
Pro
GGG
[ENA]
¢þ
>WENV170012598
ASRM01000957
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
838
762
-
Arg
CCT
[ENA]
¢þ
>WENV170012611
ASRM01002086
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
927
838
-
Ser
GGA
[ENA]
¢þ
>WENV170012613
ASRM01002774
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
955
1029
+
Lys
TTT
[ENA]
¢þ
>WENV170012615
ASRM01003024
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
959
883
-
Arg
TCG
[ENA]
¢þ
>WENV170012608
ASRM01001806
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
966
1052
+
Leu
GAG
[ENA]
¢þ
>WENV170012602
ASRM01001338
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1007
931
-
Met
CAT
[ENA]
¢þ
>WENV170012590
ASRM01000271
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1014
938
-
Arg
TCT
[ENA]
¢þ
>WENV170012610
ASRM01002024
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1032
945
-
Ser
TGA
[ENA]
¢þ
>WENV170012587
ASRM01000075
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1199
1274
+
Cys
GCA
[ENA]
¢þ
>WENV170012603
ASRM01001434
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1387
1474
+
Ser
GGA
[ENA]
¢þ
>WENV170012597
ASRM01000821
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1410
1486
+
Met
CAT
[ENA]
¢þ
>WENV170012601
ASRM01001131
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1509
1433
-
Met
CAT
[ENA]
¢þ
>WENV170012596
ASRM01000818
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1806
1731
-
Asp
ATC
[ENA]
¢þ
>WENV170012581
ASRM01000025
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1842
1767
-
Met
CAT
[ENA]
¢þ
>WENV170012599
ASRM01000984
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2058
1983
-
Thr
TGT
[ENA]
¢þ
>WENV170012594
ASRM01000725
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2600
2513
-
Ser
GGA
[ENA]
¢þ
>WENV170012595
ASRM01000761
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2963
2887
-
Thr
GGT
[ENA]
¢þ
>WENV170012593
ASRM01000540
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4170
4244
+
Gly
TCC
[ENA]
¢þ
>WENV170012592
ASRM01000344
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
7142
7055
-
Ser
TGA
[ENA]
¢þ
>WENV170012584
ASRM01000051
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
8017
7933
-
Leu
GAG
[ENA]
¢þ
>WENV170012589
ASRM01000130
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
11338
11413
+
Asn
GTT
[ENA]
¢þ
>WENV170012585
ASRM01000058
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
21190
21276
+
Leu
TAA
[ENA]
¢þ
>WENV170012583
ASRM01000048
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
22783
22858
+
Glu
TTC
[ENA]
¢þ
>WENV170012580
ASRM01000005
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
45638
45722
+
Leu
CAA
[ENA]
¢þ
>WENV170012579
ASRM01000004
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
55718
55794
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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