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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
HIT:
87 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170012721
ASRN01004658
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4
78
+
Glu
TTC
[ENA]
¢þ
>WENV170012731
ASRN01006075
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
8
84
+
Asp
GTC
[ENA]
¢þ
>WENV170012692
ASRN01001757
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
21
95
+
Val
GAC
[ENA]
¢þ
>WENV170012712
ASRN01003424
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
40
129
+
Ser
GGA
[ENA]
¢þ
>WENV170012728
ASRN01005716
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
70
146
+
Met
CAT
[ENA]
¢þ
>WENV170012734
ASRN01006300
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
86
173
+
Ser
TGA
[ENA]
¢þ
>WENV170012662
ASRN01000067
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
87
1
-
Leu
TAA
[ENA]
¢þ
>WENV170012685
ASRN01001043
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
112
37
-
Arg
TCG
[ENA]
¢þ
>WENV170012713
ASRN01003471
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
112
185
+
Cys
GCA
[ENA]
¢þ
>WENV170012702
ASRN01002431
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
115
40
-
Phe
GAA
[ENA]
¢þ
>WENV170012659
ASRN01000056
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
118
42
-
Met
CAT
[ENA]
¢þ
>WENV170012706
ASRN01002913
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
123
198
+
Trp
CCA
[ENA]
¢þ
>WENV170012730
ASRN01005717
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
127
52
-
Val
TAC
[ENA]
¢þ
>WENV170012719
ASRN01004522
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
129
56
-
Gly
TCC
[ENA]
¢þ
>WENV170012722
ASRN01004658
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
138
213
+
Val
TAC
[ENA]
¢þ
>WENV170012733
ASRN01006182
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
141
65
-
Thr
TGT
[ENA]
¢þ
>WENV170012707
ASRN01003097
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
142
65
-
Pro
TGG
[ENA]
¢þ
>WENV170012737
ASRN01006515
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
173
102
-
Glu
TTC
[ENA]
¢þ
>WENV170012704
ASRN01002608
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
175
251
+
Arg
ACG
[ENA]
¢þ
>WENV170012664
ASRN01000082
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
196
119
-
Thr
TGT
[ENA]
¢þ
>WENV170012735
ASRN01006506
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
200
116
-
Leu
TAG
[ENA]
¢þ
>WENV170012716
ASRN01004208
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
202
126
-
Val
GAC
[ENA]
¢þ
>WENV170012732
ASRN01006182
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
226
150
-
Met
CAT
[ENA]
¢þ
>WENV170012723
ASRN01004658
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
226
302
+
Asp
GTC
[ENA]
¢þ
>WENV170012658
ASRN01000056
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
229
139
-
Ser
GCT
[ENA]
¢þ
>WENV170012725
ASRN01005558
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
231
156
-
Ala
TGC
[ENA]
¢þ
>WENV170012718
ASRN01004522
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
233
149
-
Tyr
GTA
[ENA]
¢þ
>WENV170012701
ASRN01002299
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
237
161
-
Arg
CCT
[ENA]
¢þ
>WENV170012736
ASRN01006515
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
255
184
-
Asn
GTT
[ENA]
¢þ
>WENV170012729
ASRN01005716
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
255
331
+
Thr
TGT
[ENA]
¢þ
>WENV170012691
ASRN01001657
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
262
337
+
Thr
TGT
[ENA]
¢þ
>WENV170012663
ASRN01000082
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
285
210
-
Phe
GAA
[ENA]
¢þ
>WENV170012727
ASRN01005589
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
291
217
-
Phe
GAA
[ENA]
¢þ
>WENV170012720
ASRN01004593
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
302
216
-
Leu
TAA
[ENA]
¢þ
>WENV170012687
ASRN01001298
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
328
401
+
Val
GAC
[ENA]
¢þ
>WENV170012724
ASRN01005558
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170012703
ASRN01002519
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
351
437
+
Leu
CAG
[ENA]
¢þ
>WENV170012726
ASRN01005589
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
417
332
-
Leu
TAA
[ENA]
¢þ
>WENV170012717
ASRN01004425
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
573
647
+
Gln
TTG
[ENA]
¢þ
>WENV170012715
ASRN01003896
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
654
729
+
Ala
GGC
[ENA]
¢þ
>WENV170012714
ASRN01003838
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
702
775
+
Pro
CGG
[ENA]
¢þ
>WENV170012655
ASRN01000036
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
770
846
+
Arg
TCG
[ENA]
¢þ
>WENV170012711
ASRN01003346
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
795
720
-
Ala
TGC
[ENA]
¢þ
>WENV170012705
ASRN01002778
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
827
740
-
Ser
CGA
[ENA]
¢þ
>WENV170012709
ASRN01003318
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
876
792
-
Leu
TAG
[ENA]
¢þ
>WENV170012710
ASRN01003346
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
908
832
-
Ile
GAT
[ENA]
¢þ
>WENV170012682
ASRN01000740
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
926
842
-
Leu
CAA
[ENA]
¢þ
>WENV170012708
ASRN01003318
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1001
926
-
His
GTG
[ENA]
¢þ
>WENV170012695
ASRN01001888
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1127
1203
+
Pro
GGG
[ENA]
¢þ
>WENV170012698
ASRN01002081
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1245
1169
-
Val
TAC
[ENA]
¢þ
>WENV170012684
ASRN01001042
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1260
1336
+
Pro
CGG
[ENA]
¢þ
>WENV170012700
ASRN01002182
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1351
1438
+
Ser
GGA
[ENA]
¢þ
>WENV170012697
ASRN01002081
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1357
1282
-
Arg
TCT
[ENA]
¢þ
>WENV170012688
ASRN01001347
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1387
1463
+
Met
CAT
[ENA]
¢þ
>WENV170012696
ASRN01001901
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1477
1563
+
Leu
GAG
[ENA]
¢þ
>WENV170012699
ASRN01002082
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1666
1592
-
Thr
GGT
[ENA]
¢þ
>WENV170012683
ASRN01001021
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1674
1598
-
Met
CAT
[ENA]
¢þ
>WENV170012672
ASRN01000234
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1715
1800
+
Leu
AAG
[ENA]
¢þ
>WENV170012667
ASRN01000148
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1766
1693
-
Val
GAC
[ENA]
¢þ
>WENV170012693
ASRN01001799
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1913
1988
+
Asn
GTT
[ENA]
¢þ
>WENV170012681
ASRN01000733
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1917
2004
+
Ser
TGA
[ENA]
¢þ
>WENV170012694
ASRN01001799
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1990
2066
+
Pro
TGG
[ENA]
¢þ
>WENV170012690
ASRN01001557
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2192
2117
-
Met
CAT
[ENA]
¢þ
>WENV170012689
ASRN01001557
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2292
2220
-
Val
TAC
[ENA]
¢þ
>WENV170012665
ASRN01000094
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2768
2684
-
Leu
GAG
[ENA]
¢þ
>WENV170012686
ASRN01001057
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3286
3211
-
Trp
CCA
[ENA]
¢þ
>WENV170012679
ASRN01000574
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3327
3251
-
Arg
CCG
[ENA]
¢þ
>WENV170012677
ASRN01000518
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3454
3530
+
Pro
GGG
[ENA]
¢þ
>WENV170012675
ASRN01000278
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3952
3877
-
Thr
GGT
[ENA]
¢þ
>WENV170012676
ASRN01000471
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4096
4022
-
Thr
GGT
[ENA]
¢þ
>WENV170012680
ASRN01000632
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4145
4070
-
Phe
GAA
[ENA]
¢þ
>WENV170012678
ASRN01000524
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
5150
5237
+
Leu
CAA
[ENA]
¢þ
>WENV170012652
ASRN01000006
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
7578
7502
-
Arg
TCG
[ENA]
¢þ
>WENV170012674
ASRN01000244
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
8701
8627
-
Asn
GTT
[ENA]
¢þ
>WENV170012673
ASRN01000241
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
8862
8787
-
Arg
TCG
[ENA]
¢þ
>WENV170012671
ASRN01000210
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9979
9903
-
Met
CAT
[ENA]
¢þ
>WENV170012670
ASRN01000210
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10521
10445
-
Arg
TCT
[ENA]
¢þ
>WENV170012669
ASRN01000202
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10937
11012
+
Lys
TTT
[ENA]
¢þ
>WENV170012668
ASRN01000150
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
12689
12614
-
Arg
CCT
[ENA]
¢þ
>WENV170012666
ASRN01000128
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
14033
13958
-
Ala
GGC
[ENA]
¢þ
>WENV170012657
ASRN01000054
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20729
20804
+
Glu
TTC
[ENA]
¢þ
>WENV170012661
ASRN01000059
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
22816
22741
-
Cys
GCA
[ENA]
¢þ
>WENV170012654
ASRN01000028
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23344
23419
+
Glu
TTC
[ENA]
¢þ
>WENV170012660
ASRN01000059
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23952
23864
-
Ser
TGA
[ENA]
¢þ
>WENV170012656
ASRN01000053
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
24973
25059
+
Leu
TAA
[ENA]
¢þ
>WENV170012653
ASRN01000014
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
64489
64414
-
Trp
CCA
[ENA]
¢þ
>WENV170012651
ASRN01000001
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
135210
135294
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK