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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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tRNA gene List
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
HIT:
84 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170012767
ASRO01000285
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
25
109
+
Leu
CAA
[ENA]
¢þ
>WENV170012805
ASRO01003987
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
46
121
+
His
GTG
[ENA]
¢þ
>WENV170012788
ASRO01001494
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
72
2
-
Gly
TCC
[ENA]
¢þ
>WENV170012749
ASRO01000029
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
73
149
+
Arg
ACG
[ENA]
¢þ
>WENV170012752
ASRO01000048
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
76
1
-
Lys
TTT
[ENA]
¢þ
>WENV170012794
ASRO01002525
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
77
150
+
Cys
GCA
[ENA]
¢þ
>WENV170012753
ASRO01000060
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
91
166
+
Met
CAT
[ENA]
¢þ
>WENV170012815
ASRO01005503
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
92
167
+
Arg
TCT
[ENA]
¢þ
>WENV170012802
ASRO01003533
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
97
8
-
Ser
CGA
[ENA]
¢þ
>WENV170012785
ASRO01001487
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
111
187
+
Met
CAT
[ENA]
¢þ
>WENV170012817
ASRO01005716
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
114
185
+
Asn
GTT
[ENA]
¢þ
>WENV170012801
ASRO01003501
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
136
60
-
Arg
TCG
[ENA]
¢þ
>WENV170012808
ASRO01004048
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
151
227
+
Arg
CCG
[ENA]
¢þ
>WENV170012807
ASRO01004026
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
162
77
-
Leu
CAA
[ENA]
¢þ
>WENV170012820
ASRO01006698
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
165
241
+
Thr
TGT
[ENA]
¢þ
>WENV170012757
ASRO01000084
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
166
240
+
Thr
GGT
[ENA]
¢þ
>WENV170012806
ASRO01003987
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
171
255
+
Leu
TAG
[ENA]
¢þ
>WENV170012760
ASRO01000114
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
176
86
-
Ser
GGA
[ENA]
¢þ
>WENV170012811
ASRO01005254
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
177
249
+
Thr
TGT
[ENA]
¢þ
>WENV170012809
ASRO01004588
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
185
110
-
Ala
GGC
[ENA]
¢þ
>WENV170012803
ASRO01003693
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
193
268
+
Ala
TGC
[ENA]
¢þ
>WENV170012816
ASRO01005503
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
193
269
+
His
GTG
[ENA]
¢þ
>WENV170012818
ASRO01005716
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
194
265
+
Glu
TTC
[ENA]
¢þ
>WENV170012821
ASRO01007083
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
200
127
-
Pro
GGG
[ENA]
¢þ
>WENV170012784
ASRO01001353
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
219
306
+
Ser
TGA
[ENA]
¢þ
>WENV170012796
ASRO01002629
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
220
144
-
Met
CAT
[ENA]
¢þ
>WENV170012800
ASRO01003043
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
223
148
-
Thr
GGT
[ENA]
¢þ
>WENV170012769
ASRO01000363
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
226
150
-
Met
CAT
[ENA]
¢þ
>WENV170012764
ASRO01000188
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
230
154
-
Met
CAT
[ENA]
¢þ
>WENV170012814
ASRO01005355
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
231
156
-
Ala
TGC
[ENA]
¢þ
>WENV170012778
ASRO01000822
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
232
307
+
Thr
TGT
[ENA]
¢þ
>WENV170012819
ASRO01005958
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
268
354
+
Leu
TAA
[ENA]
¢þ
>WENV170012812
ASRO01005254
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
278
351
+
Met
CAT
[ENA]
¢þ
>WENV170012799
ASRO01003043
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
316
243
-
Gly
TCC
[ENA]
¢þ
>WENV170012759
ASRO01000114
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
320
233
-
Ser
TGA
[ENA]
¢þ
>WENV170012813
ASRO01005355
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170012763
ASRO01000188
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
351
261
-
Ser
GCT
[ENA]
¢þ
>WENV170012798
ASRO01003043
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
420
336
-
Tyr
GTA
[ENA]
¢þ
>WENV170012810
ASRO01005092
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
447
358
-
Ser
GGA
[ENA]
¢þ
>WENV170012795
ASRO01002543
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
470
556
+
Leu
GAG
[ENA]
¢þ
>WENV170012804
ASRO01003713
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
648
574
-
Lys
TTT
[ENA]
¢þ
>WENV170012783
ASRO01001326
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
765
841
+
Pro
GGG
[ENA]
¢þ
>WENV170012793
ASRO01002189
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
795
720
-
Ala
TGC
[ENA]
¢þ
>WENV170012797
ASRO01002651
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
813
889
+
Ile
GAT
[ENA]
¢þ
>WENV170012792
ASRO01002189
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
908
832
-
Ile
GAT
[ENA]
¢þ
>WENV170012761
ASRO01000120
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
940
1014
+
Thr
GGT
[ENA]
¢þ
>WENV170012789
ASRO01001826
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
989
1064
+
Asn
GTT
[ENA]
¢þ
>WENV170012791
ASRO01002019
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1010
923
-
Ser
GGA
[ENA]
¢þ
>WENV170012790
ASRO01001826
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1066
1142
+
Pro
TGG
[ENA]
¢þ
>WENV170012786
ASRO01001491
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1121
1035
-
Leu
CAG
[ENA]
¢þ
>WENV170012777
ASRO01000726
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1262
1187
-
Thr
GGT
[ENA]
¢þ
>WENV170012787
ASRO01001494
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1284
1357
+
Pro
CGG
[ENA]
¢þ
>WENV170012758
ASRO01000084
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170012782
ASRO01001106
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1847
1772
-
Gly
GCC
[ENA]
¢þ
>WENV170012771
ASRO01000464
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1851
1776
-
Glu
TTC
[ENA]
¢þ
>WENV170012780
ASRO01000988
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1950
2031
+
Tyr
GTA
[ENA]
¢þ
>WENV170012781
ASRO01000988
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2046
2122
+
Met
CAT
[ENA]
¢þ
>WENV170012779
ASRO01000976
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2057
2129
+
Gly
GCC
[ENA]
¢þ
>WENV170012776
ASRO01000643
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2349
2274
-
Cys
GCA
[ENA]
¢þ
>WENV170012766
ASRO01000236
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2763
2689
-
Asn
GTT
[ENA]
¢þ
>WENV170012756
ASRO01000078
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3599
3671
+
Thr
CGT
[ENA]
¢þ
>WENV170012775
ASRO01000514
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4184
4110
-
Cys
GCA
[ENA]
¢þ
>WENV170012774
ASRO01000514
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4320
4232
-
Ser
TGA
[ENA]
¢þ
>WENV170012770
ASRO01000426
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4323
4239
-
Leu
GAG
[ENA]
¢þ
>WENV170012772
ASRO01000486
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4600
4686
+
Leu
TAA
[ENA]
¢þ
>WENV170012768
ASRO01000359
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4618
4533
-
Leu
AAG
[ENA]
¢þ
>WENV170012773
ASRO01000488
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4652
4568
-
Leu
TAG
[ENA]
¢þ
>WENV170012765
ASRO01000211
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10602
10677
+
Arg
CCT
[ENA]
¢þ
>WENV170012762
ASRO01000169
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
11812
11725
-
Ser
GGA
[ENA]
¢þ
>WENV170012755
ASRO01000068
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
16681
16754
+
Val
GAC
[ENA]
¢þ
>WENV170012750
ASRO01000032
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
26706
26790
+
Leu
CAA
[ENA]
¢þ
>WENV170012754
ASRO01000063
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
28252
28342
+
Ser
GCT
[ENA]
¢þ
>WENV170012748
ASRO01000027
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
30972
31047
+
Arg
TCG
[ENA]
¢þ
>WENV170012743
ASRO01000003
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31223
31139
-
Leu
TAG
[ENA]
¢þ
>WENV170012742
ASRO01000003
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31348
31272
-
Arg
TCT
[ENA]
¢þ
>WENV170012741
ASRO01000003
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31434
31358
-
His
GTG
[ENA]
¢þ
>WENV170012740
ASRO01000003
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31538
31461
-
Pro
TGG
[ENA]
¢þ
>WENV170012751
ASRO01000044
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
35929
35853
-
Asp
GTC
[ENA]
¢þ
>WENV170012747
ASRO01000006
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
51021
50946
-
Glu
TTC
[ENA]
¢þ
>WENV170012739
ASRO01000001
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
60967
60892
-
Ala
GGC
[ENA]
¢þ
>WENV170012738
ASRO01000001
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
61067
60983
-
Leu
GAG
[ENA]
¢þ
>WENV170012746
ASRO01000005
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
77804
77728
-
Arg
TCG
[ENA]
¢þ
>WENV170012745
ASRO01000005
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
104375
104301
-
Val
GAC
[ENA]
¢þ
>WENV170012744
ASRO01000005
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
106710
106634
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK