This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
HIT:
95 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170012841
ASRP01000803
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1
76
+
Trp
CCA
[ENA]
¢þ
>WENV170012895
ASRP01012226
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3
78
+
Thr
TGT
[ENA]
¢þ
>WENV170012847
ASRP01001057
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4
87
+
Leu
TAG
[ENA]
¢þ
>WENV170012835
ASRP01000558
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
14
110
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170012873
ASRP01005369
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
15
102
+
Leu
CAA
[ENA]
¢þ
>WENV170012875
ASRP01006046
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
24
98
+
Thr
GGT
[ENA]
¢þ
>WENV170012894
ASRP01011557
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
73
1
-
Trp
CCA
[ENA]
¢þ
>WENV170012836
ASRP01000570
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV170012830
ASRP01000265
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
74
150
+
Arg
ACG
[ENA]
¢þ
>WENV170012829
ASRP01000197
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
79
4
-
Phe
GAA
[ENA]
¢þ
>WENV170012912
ASRP01021159
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
94
20
-
Ala
TGC
[ENA]
¢þ
>WENV170012914
ASRP01021986
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
95
24
-
Glu
TTC
[ENA]
¢þ
>WENV170012908
ASRP01019622
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
97
22
-
Thr
TGT
[ENA]
¢þ
>WENV170012904
ASRP01016674
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
106
30
-
Met
CAT
[ENA]
¢þ
>WENV170012884
ASRP01008706
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
109
185
+
Ile
GAT
[ENA]
¢þ
>WENV170012893
ASRP01011437
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
113
39
-
Asn
GTT
[ENA]
¢þ
>WENV170012863
ASRP01003336
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
131
215
+
Leu
GAG
[ENA]
¢þ
>WENV170012869
ASRP01004020
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
132
47
-
Leu
TAA
[ENA]
¢þ
>WENV170012887
ASRP01009335
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
132
207
+
Glu
TTC
[ENA]
¢þ
>WENV170012862
ASRP01003309
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
133
59
-
Gln
TTG
[ENA]
¢þ
>WENV170012866
ASRP01004001
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
140
216
+
Ile
GAT
[ENA]
¢þ
>WENV170012882
ASRP01008284
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
145
61
-
Leu
GAG
[ENA]
¢þ
>WENV170012886
ASRP01008781
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
153
80
-
Val
GAC
[ENA]
¢þ
>WENV170012891
ASRP01011086
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
153
226
+
Gly
CCC
[ENA]
¢þ
>WENV170012839
ASRP01000741
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
166
240
+
Thr
GGT
[ENA]
¢þ
>WENV170012890
ASRP01010454
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
176
101
-
Gly
GCC
[ENA]
¢þ
>WENV170012913
ASRP01021986
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
177
106
-
Asn
GTT
[ENA]
¢þ
>WENV170012911
ASRP01021159
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
185
111
-
Ile
GAT
[ENA]
¢þ
>WENV170012915
ASRP01022330
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
185
260
+
Lys
CTT
[ENA]
¢þ
>WENV170012916
ASRP01026500
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
188
112
-
Met
CAT
[ENA]
¢þ
>WENV170012907
ASRP01019622
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
190
115
-
Lys
TTT
[ENA]
¢þ
>WENV170012896
ASRP01012251
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
190
265
+
Glu
TTC
[ENA]
¢þ
>WENV170012888
ASRP01009335
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
210
285
+
Lys
TTT
[ENA]
¢þ
>WENV170012898
ASRP01012442
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
231
156
-
Ala
TGC
[ENA]
¢þ
>WENV170012864
ASRP01003336
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
231
306
+
Ala
GGC
[ENA]
¢þ
>WENV170012910
ASRP01020728
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
243
168
-
Asn
GTT
[ENA]
¢þ
>WENV170012902
ASRP01014108
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
246
170
-
Arg
TCT
[ENA]
¢þ
>WENV170012867
ASRP01004001
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
253
328
+
Ala
TGC
[ENA]
¢þ
>WENV170012905
ASRP01016735
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
261
347
+
Leu
TAA
[ENA]
¢þ
>WENV170012868
ASRP01004020
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
266
185
-
Tyr
GTA
[ENA]
¢þ
>WENV170012877
ASRP01007222
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
268
343
+
Phe
GAA
[ENA]
¢þ
>WENV170012874
ASRP01005735
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
271
195
-
His
GTG
[ENA]
¢þ
>WENV170012906
ASRP01019622
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
281
205
-
Arg
TCT
[ENA]
¢þ
>WENV170012900
ASRP01012737
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
284
208
-
Arg
TCT
[ENA]
¢þ
>WENV170012901
ASRP01013139
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
290
366
+
Pro
GGG
[ENA]
¢þ
>WENV170012876
ASRP01006199
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
301
226
-
Arg
TCG
[ENA]
¢þ
>WENV170012909
ASRP01019746
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
302
227
-
Thr
GGT
[ENA]
¢þ
>WENV170012885
ASRP01008706
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
311
386
+
Ala
TGC
[ENA]
¢þ
>WENV170012889
ASRP01009335
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
316
391
+
Val
TAC
[ENA]
¢þ
>WENV170012883
ASRP01008369
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
331
255
-
Arg
CCT
[ENA]
¢þ
>WENV170012897
ASRP01012442
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170012899
ASRP01012559
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
345
420
+
Trp
CCA
[ENA]
¢þ
>WENV170012903
ASRP01016062
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
350
275
-
Pro
TGG
[ENA]
¢þ
>WENV170012878
ASRP01007222
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
399
474
+
Asn
GTT
[ENA]
¢þ
>WENV170012880
ASRP01007744
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
414
339
-
Lys
TTT
[ENA]
¢þ
>WENV170012892
ASRP01011422
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
418
344
-
Lys
TTT
[ENA]
¢þ
>WENV170012881
ASRP01007808
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
444
371
-
Arg
CCT
[ENA]
¢þ
>WENV170012879
ASRP01007647
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
535
459
-
Met
CAT
[ENA]
¢þ
>WENV170012872
ASRP01004956
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
584
509
-
Ala
GGC
[ENA]
¢þ
>WENV170012852
ASRP01002085
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
597
521
-
Pro
CGG
[ENA]
¢þ
>WENV170012871
ASRP01004506
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
684
609
-
Ala
TGC
[ENA]
¢þ
>WENV170012870
ASRP01004506
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
765
689
-
Ile
GAT
[ENA]
¢þ
>WENV170012854
ASRP01002865
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
814
742
-
Thr
CGT
[ENA]
¢þ
>WENV170012855
ASRP01002882
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
850
764
-
Leu
TAA
[ENA]
¢þ
>WENV170012853
ASRP01002642
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
865
778
-
Ser
GGA
[ENA]
¢þ
>WENV170012865
ASRP01003458
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
916
1001
+
Leu
CAA
[ENA]
¢þ
>WENV170012823
ASRP01000035
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
932
856
-
Pro
GGG
[ENA]
¢þ
>WENV170012859
ASRP01003002
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
953
878
-
Ala
TGC
[ENA]
¢þ
>WENV170012858
ASRP01003002
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1064
988
-
Ile
GAT
[ENA]
¢þ
>WENV170012861
ASRP01003242
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1138
1215
+
Pro
TGG
[ENA]
¢þ
>WENV170012860
ASRP01003157
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1139
1214
+
Lys
TTT
[ENA]
¢þ
>WENV170012857
ASRP01002975
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1178
1104
-
Cys
GCA
[ENA]
¢þ
>WENV170012845
ASRP01000866
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1309
1225
-
Leu
TAG
[ENA]
¢þ
>WENV170012856
ASRP01002975
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1314
1226
-
Ser
TGA
[ENA]
¢þ
>WENV170012831
ASRP01000333
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1336
1412
+
Arg
TCG
[ENA]
¢þ
>WENV170012833
ASRP01000444
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1351
1438
+
Ser
GGA
[ENA]
¢þ
>WENV170012850
ASRP01001415
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1396
1321
-
Cys
GCA
[ENA]
¢þ
>WENV170012844
ASRP01000866
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1434
1358
-
Arg
TCT
[ENA]
¢þ
>WENV170012843
ASRP01000866
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1520
1444
-
His
GTG
[ENA]
¢þ
>WENV170012842
ASRP01000866
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1624
1547
-
Pro
TGG
[ENA]
¢þ
>WENV170012838
ASRP01000640
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1646
1571
-
Thr
GGT
[ENA]
¢þ
>WENV170012840
ASRP01000741
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170012851
ASRP01001525
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2081
2155
+
Asn
GTT
[ENA]
¢þ
>WENV170012846
ASRP01000876
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2086
2161
+
Arg
TCG
[ENA]
¢þ
>WENV170012849
ASRP01001292
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2558
2482
-
Asp
GTC
[ENA]
¢þ
>WENV170012832
ASRP01000361
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2614
2698
+
Leu
CAA
[ENA]
¢þ
>WENV170012848
ASRP01001108
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2872
2796
-
Met
CAT
[ENA]
¢þ
>WENV170012837
ASRP01000591
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3446
3373
-
Val
GAC
[ENA]
¢þ
>WENV170012827
ASRP01000121
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3624
3700
+
Arg
TCG
[ENA]
¢þ
>WENV170012834
ASRP01000476
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4637
4553
-
Leu
CAA
[ENA]
¢þ
>WENV170012828
ASRP01000134
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
7349
7274
-
Glu
TTC
[ENA]
¢þ
>WENV170012825
ASRP01000089
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9793
9883
+
Ser
GCT
[ENA]
¢þ
>WENV170012826
ASRP01000089
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9914
9990
+
Met
CAT
[ENA]
¢þ
>WENV170012824
ASRP01000048
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
12965
12891
-
Val
GAC
[ENA]
¢þ
>WENV170012822
ASRP01000007
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
17256
17180
-
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK