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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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tRNA gene List
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
HIT:
89 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170012976
ASRQ01000927
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2
76
+
Gln
TTG
[ENA]
¢þ
>WENV170012977
ASRQ01001059
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
5
97
+
Ser
GCT
[ENA]
¢þ
>WENV170013004
ASRQ01004302
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20
95
+
Val
TAC
[ENA]
¢þ
>WENV170012938
ASRQ01000084
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
69
145
+
Asp
GTC
[ENA]
¢þ
>WENV170012928
ASRQ01000011
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
73
149
+
Arg
ACG
[ENA]
¢þ
>WENV170012989
ASRQ01001910
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
76
1
-
Glu
TTC
[ENA]
¢þ
>WENV170013002
ASRQ01003815
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
76
150
+
Ala
TGC
[ENA]
¢þ
>WENV170012994
ASRQ01003529
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
78
4
-
Gly
GCC
[ENA]
¢þ
>WENV170013005
ASRQ01004319
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
80
156
+
Met
CAT
[ENA]
¢þ
>WENV170012941
ASRQ01000106
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
91
166
+
Met
CAT
[ENA]
¢þ
>WENV170012997
ASRQ01003708
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
92
167
+
Arg
TCT
[ENA]
¢þ
>WENV170012955
ASRQ01000217
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
95
179
+
Leu
TAG
[ENA]
¢þ
>WENV170012987
ASRQ01001679
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
140
216
+
Ile
GAT
[ENA]
¢þ
>WENV170012979
ASRQ01001140
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
163
90
-
Pro
CGG
[ENA]
¢þ
>WENV170012944
ASRQ01000140
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
166
240
+
Thr
GGT
[ENA]
¢þ
>WENV170012999
ASRQ01003748
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
168
79
-
Ser
CGA
[ENA]
¢þ
>WENV170012942
ASRQ01000111
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
176
86
-
Ser
GCT
[ENA]
¢þ
>WENV170012998
ASRQ01003708
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
193
269
+
His
GTG
[ENA]
¢þ
>WENV170013003
ASRQ01004275
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
200
127
-
Pro
GGG
[ENA]
¢þ
>WENV170012996
ASRQ01003644
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
231
156
-
Ala
TGC
[ENA]
¢þ
>WENV170013001
ASRQ01003793
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
232
161
-
Glu
TTC
[ENA]
¢þ
>WENV170012988
ASRQ01001679
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
253
328
+
Ala
TGC
[ENA]
¢þ
>WENV170013000
ASRQ01003793
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
312
241
-
Asn
GTT
[ENA]
¢þ
>WENV170012995
ASRQ01003644
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170012974
ASRQ01000768
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
366
452
+
Leu
CAG
[ENA]
¢þ
>WENV170012992
ASRQ01003089
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
421
505
+
Leu
TAG
[ENA]
¢þ
>WENV170012990
ASRQ01002621
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
458
534
+
Arg
CCT
[ENA]
¢þ
>WENV170012993
ASRQ01003371
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
479
406
-
Cys
GCA
[ENA]
¢þ
>WENV170012982
ASRQ01001420
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
560
484
-
Met
CAT
[ENA]
¢þ
>WENV170012986
ASRQ01001595
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
579
503
-
Arg
TCT
[ENA]
¢þ
>WENV170012991
ASRQ01002654
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
649
563
-
Leu
GAG
[ENA]
¢þ
>WENV170012983
ASRQ01001485
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
736
660
-
Val
TAC
[ENA]
¢þ
>WENV170012973
ASRQ01000647
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
747
673
-
Val
GAC
[ENA]
¢þ
>WENV170012984
ASRQ01001534
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
800
724
-
Arg
CCG
[ENA]
¢þ
>WENV170012985
ASRQ01001572
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
809
734
-
Trp
CCA
[ENA]
¢þ
>WENV170012975
ASRQ01000833
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
826
741
-
Leu
TAA
[ENA]
¢þ
>WENV170012980
ASRQ01001144
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
868
792
-
Pro
GGG
[ENA]
¢þ
>WENV170012958
ASRQ01000294
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1144
1218
+
Thr
GGT
[ENA]
¢þ
>WENV170012981
ASRQ01001366
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1160
1235
+
Thr
CGT
[ENA]
¢þ
>WENV170012971
ASRQ01000619
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1173
1097
-
His
GTG
[ENA]
¢þ
>WENV170012969
ASRQ01000544
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1212
1137
-
Ala
GGC
[ENA]
¢þ
>WENV170012964
ASRQ01000323
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1227
1152
-
Thr
TGT
[ENA]
¢þ
>WENV170012953
ASRQ01000211
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1351
1438
+
Ser
GGA
[ENA]
¢þ
>WENV170012978
ASRQ01001112
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1389
1459
+
Gln
CTG
[ENA]
¢þ
>WENV170012945
ASRQ01000140
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170012970
ASRQ01000573
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1839
1915
+
Met
CAT
[ENA]
¢þ
>WENV170012972
ASRQ01000627
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1891
1817
-
Gln
TTG
[ENA]
¢þ
>WENV170012946
ASRQ01000145
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2105
2179
+
Asn
GTT
[ENA]
¢þ
>WENV170012968
ASRQ01000422
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2212
2137
-
Ala
TGC
[ENA]
¢þ
>WENV170012967
ASRQ01000422
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2323
2247
-
Ile
GAT
[ENA]
¢þ
>WENV170012966
ASRQ01000330
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2690
2779
+
Ser
TGA
[ENA]
¢þ
>WENV170012961
ASRQ01000316
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3731
3658
-
Gly
CCC
[ENA]
¢þ
>WENV170012965
ASRQ01000325
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4052
3976
-
Arg
ACG
[ENA]
¢þ
>WENV170012959
ASRQ01000295
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4081
4006
-
Cys
GCA
[ENA]
¢þ
>WENV170012963
ASRQ01000317
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4184
4110
-
Cys
GCA
[ENA]
¢þ
>WENV170012962
ASRQ01000317
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4320
4232
-
Ser
TGA
[ENA]
¢þ
>WENV170012960
ASRQ01000302
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4637
4561
-
Met
CAT
[ENA]
¢þ
>WENV170012952
ASRQ01000201
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
6483
6559
+
Arg
TCG
[ENA]
¢þ
>WENV170012940
ASRQ01000096
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
8035
8121
+
Leu
TAA
[ENA]
¢þ
>WENV170012956
ASRQ01000227
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10184
10099
-
Leu
AAG
[ENA]
¢þ
>WENV170012943
ASRQ01000118
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10731
10642
-
Ser
CGA
[ENA]
¢þ
>WENV170012957
ASRQ01000232
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
11359
11434
+
Lys
TTT
[ENA]
¢þ
>WENV170012954
ASRQ01000214
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
12228
12303
+
Glu
TTC
[ENA]
¢þ
>WENV170012951
ASRQ01000180
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
12856
12780
-
Met
CAT
[ENA]
¢þ
>WENV170012937
ASRQ01000068
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
12894
12978
+
Leu
GAG
[ENA]
¢þ
>WENV170012949
ASRQ01000171
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
17747
17834
+
Ser
TGA
[ENA]
¢þ
>WENV170012950
ASRQ01000171
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
17891
17981
+
Ser
GGA
[ENA]
¢þ
>WENV170012947
ASRQ01000148
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20543
20633
+
Ser
GCT
[ENA]
¢þ
>WENV170012948
ASRQ01000148
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20664
20740
+
Met
CAT
[ENA]
¢þ
>WENV170012939
ASRQ01000089
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
24958
24874
-
Leu
CAA
[ENA]
¢þ
>WENV170012933
ASRQ01000044
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
26706
26790
+
Leu
CAA
[ENA]
¢þ
>WENV170012936
ASRQ01000059
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
27000
27072
+
Thr
CGT
[ENA]
¢þ
>WENV170012931
ASRQ01000028
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
27534
27618
+
Leu
CAA
[ENA]
¢þ
>WENV170012930
ASRQ01000026
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
27864
27937
+
Arg
CCT
[ENA]
¢þ
>WENV170012927
ASRQ01000008
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31223
31139
-
Leu
TAG
[ENA]
¢þ
>WENV170012926
ASRQ01000008
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31348
31272
-
Arg
TCT
[ENA]
¢þ
>WENV170012925
ASRQ01000008
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31434
31358
-
His
GTG
[ENA]
¢þ
>WENV170012924
ASRQ01000008
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31538
31461
-
Pro
TGG
[ENA]
¢þ
>WENV170012935
ASRQ01000057
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
36265
36340
+
Glu
TTC
[ENA]
¢þ
>WENV170012934
ASRQ01000047
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
51582
51657
+
Pro
TGG
[ENA]
¢þ
>WENV170012932
ASRQ01000035
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
57805
57730
-
Trp
CCA
[ENA]
¢þ
>WENV170012920
ASRQ01000005
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
72492
72417
-
Arg
TCG
[ENA]
¢þ
>WENV170012929
ASRQ01000017
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
75074
75000
-
Thr
GGT
[ENA]
¢þ
>WENV170012923
ASRQ01000007
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
77804
77728
-
Arg
TCG
[ENA]
¢þ
>WENV170012917
ASRQ01000001
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
83723
83807
+
Leu
GAG
[ENA]
¢þ
>WENV170012918
ASRQ01000001
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
83823
83898
+
Ala
GGC
[ENA]
¢þ
>WENV170012922
ASRQ01000007
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
104375
104301
-
Val
GAC
[ENA]
¢þ
>WENV170012921
ASRQ01000007
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
106710
106634
-
Pro
GGG
[ENA]
¢þ
>WENV170012919
ASRQ01000004
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
125728
125655
-
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK