This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170013006
ASRR01000001
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
33
108
+
Ala
GGC
[ENA]
¢þ
>WENV170013068
ASRR01006574
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
50
134
+
Tyr
GTA
[ENA]
¢þ
>WENV170013062
ASRR01003164
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
88
-1
-
Ser
GGA
[ENA]
¢þ
>WENV170013066
ASRR01005730
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
92
3
-
Ser
CGA
[ENA]
¢þ
>WENV170013074
ASRR01009633
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
98
27
-
Glu
TTC
[ENA]
¢þ
>WENV170013075
ASRR01010988
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
100
183
+
Tyr
GTA
[ENA]
¢þ
>WENV170013015
ASRR01000027
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
106
22
-
Leu
GAG
[ENA]
¢þ
>WENV170013071
ASRR01008763
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
107
32
-
Met
CAT
[ENA]
¢þ
>WENV170013065
ASRR01005324
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
114
186
+
Gly
GCC
[ENA]
¢þ
>WENV170013072
ASRR01009194
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
131
55
-
Arg
TCG
[ENA]
¢þ
>WENV170013055
ASRR01001211
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
153
80
-
Pro
CGG
[ENA]
¢þ
>WENV170013069
ASRR01006574
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
156
229
+
Gly
TCC
[ENA]
¢þ
>WENV170013073
ASRR01009633
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
178
107
-
Asn
GTT
[ENA]
¢þ
>WENV170013032
ASRR01000332
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
208
132
-
Arg
CCT
[ENA]
¢þ
>WENV170013070
ASRR01008763
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
210
137
-
Val
TAC
[ENA]
¢þ
>WENV170013051
ASRR01001025
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
220
144
-
Met
CAT
[ENA]
¢þ
>WENV170013061
ASRR01003164
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
233
146
-
Ser
TGA
[ENA]
¢þ
>WENV170013044
ASRR01000828
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
235
311
+
Ile
GAT
[ENA]
¢þ
>WENV170013039
ASRR01000591
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
279
353
+
Gln
TTG
[ENA]
¢þ
>WENV170013042
ASRR01000729
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
326
402
+
Arg
CCG
[ENA]
¢þ
>WENV170013050
ASRR01001025
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
341
251
-
Ser
GCT
[ENA]
¢þ
>WENV170013045
ASRR01000828
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
346
421
+
Ala
TGC
[ENA]
¢þ
>WENV170013034
ASRR01000393
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
359
451
+
Ser
GCT
[ENA]
¢þ
>WENV170013040
ASRR01000649
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
395
322
-
Gln
CTG
[ENA]
¢þ
>WENV170013067
ASRR01005779
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
408
324
-
Leu
CAA
[ENA]
¢þ
>WENV170013060
ASRR01002358
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
455
528
+
Arg
CCT
[ENA]
¢þ
>WENV170013057
ASRR01001489
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
487
560
+
Val
GAC
[ENA]
¢þ
>WENV170013064
ASRR01004281
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
520
444
-
Met
CAT
[ENA]
¢þ
>WENV170013041
ASRR01000704
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
540
616
+
Arg
TCT
[ENA]
¢þ
>WENV170013043
ASRR01000818
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
662
747
+
Leu
CAA
[ENA]
¢þ
>WENV170013027
ASRR01000266
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
716
802
+
Leu
GAG
[ENA]
¢þ
>WENV170013063
ASRR01003405
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
736
811
+
Phe
GAA
[ENA]
¢þ
>WENV170013049
ASRR01000944
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
780
866
+
Leu
CAG
[ENA]
¢þ
>WENV170013056
ASRR01001300
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
823
738
-
Leu
TAA
[ENA]
¢þ
>WENV170013030
ASRR01000297
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
853
929
+
Met
CAT
[ENA]
¢þ
>WENV170013048
ASRR01000931
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1026
1102
+
His
GTG
[ENA]
¢þ
>WENV170013058
ASRR01001996
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1112
1187
+
Arg
TCG
[ENA]
¢þ
>WENV170013038
ASRR01000507
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1132
1058
-
Val
GAC
[ENA]
¢þ
>WENV170013059
ASRR01002173
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1165
1090
-
Lys
TTT
[ENA]
¢þ
>WENV170013046
ASRR01000867
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1246
1321
+
Ala
GGC
[ENA]
¢þ
>WENV170013053
ASRR01001153
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1325
1398
+
Cys
GCA
[ENA]
¢þ
>WENV170013054
ASRR01001211
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1365
1435
+
Gly
TCC
[ENA]
¢þ
>WENV170013052
ASRR01001030
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1466
1541
+
Trp
CCA
[ENA]
¢þ
>WENV170013025
ASRR01000207
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1704
1629
-
Thr
TGT
[ENA]
¢þ
>WENV170013033
ASRR01000338
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
2035
2124
+
Ser
TGA
[ENA]
¢þ
>WENV170013047
ASRR01000908
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
2368
2297
-
Gln
TTG
[ENA]
¢þ
>WENV170013026
ASRR01000261
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
2438
2363
-
Glu
TTC
[ENA]
¢þ
>WENV170013037
ASRR01000483
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
3480
3405
-
Thr
CGT
[ENA]
¢þ
>WENV170013029
ASRR01000285
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
3531
3442
-
Ser
GGA
[ENA]
¢þ
>WENV170013031
ASRR01000316
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
3918
3842
-
Pro
GGG
[ENA]
¢þ
>WENV170013036
ASRR01000411
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
4174
4100
-
Cys
GCA
[ENA]
¢þ
>WENV170013035
ASRR01000411
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
4310
4222
-
Ser
TGA
[ENA]
¢þ
>WENV170013028
ASRR01000268
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
5282
5358
+
Met
CAT
[ENA]
¢þ
>WENV170013017
ASRR01000064
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
5407
5331
-
Met
CAT
[ENA]
¢þ
>WENV170013021
ASRR01000161
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
5542
5468
-
Thr
GGT
[ENA]
¢þ
>WENV170013023
ASRR01000188
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
5601
5526
-
Trp
CCA
[ENA]
¢þ
>WENV170013024
ASRR01000199
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
6074
5998
-
Arg
ACG
[ENA]
¢þ
>WENV170013022
ASRR01000188
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
7218
7144
-
Thr
GGT
[ENA]
¢þ
>WENV170013019
ASRR01000097
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
7255
7328
+
Gly
CCC
[ENA]
¢þ
>WENV170013020
ASRR01000133
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
9055
8979
-
Asp
GTC
[ENA]
¢þ
>WENV170013018
ASRR01000094
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
9530
9441
-
Ser
CGA
[ENA]
¢þ
>WENV170013010
ASRR01000015
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
14012
13928
-
Leu
CAA
[ENA]
¢þ
>WENV170013016
ASRR01000060
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
16186
16261
+
Phe
GAA
[ENA]
¢þ
>WENV170013009
ASRR01000004
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
22507
22431
-
Arg
TCG
[ENA]
¢þ
>WENV170013014
ASRR01000022
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
31213
31129
-
Leu
TAG
[ENA]
¢þ
>WENV170013013
ASRR01000022
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
31338
31262
-
Arg
TCT
[ENA]
¢þ
>WENV170013012
ASRR01000022
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
31424
31348
-
His
GTG
[ENA]
¢þ
>WENV170013011
ASRR01000022
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
31528
31451
-
Pro
TGG
[ENA]
¢þ
>WENV170013008
ASRR01000004
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
49078
49004
-
Val
GAC
[ENA]
¢þ
>WENV170013007
ASRR01000004
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
51413
51337
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK