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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170013884
AVBS01008733
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
1
74
+
Thr
GGT
[ENA]
¢þ
>WENV170013887
AVBS01009901
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
1
86
+
Ser
TGA
[ENA]
¢þ
>WENV170013890
AVBS01009949
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
3
79
+
His
GTG
[ENA]
¢þ
>WENV170013897
AVBS01010025
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
3
79
+
Arg
CCG
[ENA]
¢þ
>WENV170013873
AVBS01005160
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
11
86
+
Pro
CGG
[ENA]
¢þ
>WENV170013863
AVBS01003583
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
51
127
+
Thr
TGT
[ENA]
¢þ
>WENV170013895
AVBS01009962
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
68
153
+
Ser
CGA
[ENA]
¢þ
>WENV170013869
AVBS01004197
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
74
3
-
Thr
CGT
[ENA]
¢þ
>WENV170013877
AVBS01005839
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
75
3
-
Lys
TTT
[ENA]
¢þ
>WENV170013861
AVBS01003010
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
76
2
-
Val
GAC
[ENA]
¢þ
>WENV170013870
AVBS01004373
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
77
4
-
Phe
GAA
[ENA]
¢þ
>WENV170013876
AVBS01005782
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
83
165
+
Leu
CAG
[ENA]
¢þ
>WENV170013889
AVBS01009907
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
90
163
+
Gly
TCC
[ENA]
¢þ
>WENV170013857
AVBS01002489
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
98
23
-
Phe
GAA
[ENA]
¢þ
>WENV170013888
AVBS01009901
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
102
193
+
Ser
GCT
[ENA]
¢þ
>WENV170013867
AVBS01004084
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
116
32
-
Leu
TAA
[ENA]
¢þ
>WENV170013858
AVBS01002519
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
119
204
+
Tyr
GTA
[ENA]
¢þ
>WENV170013862
AVBS01003030
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
123
51
-
Arg
CCT
[ENA]
¢þ
>WENV170013896
AVBS01009973
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
134
61
-
Gln
TTG
[ENA]
¢þ
>WENV170013872
AVBS01004801
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
149
224
+
Val
TAC
[ENA]
¢þ
>WENV170013891
AVBS01009949
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
150
224
+
Trp
CCA
[ENA]
¢þ
>WENV170013866
AVBS01003684
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
152
227
+
Thr
CGT
[ENA]
¢þ
>WENV170013885
AVBS01008760
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
153
78
-
Thr
CGT
[ENA]
¢þ
>WENV170013898
AVBS01010063
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
157
84
-
Gln
TTG
[ENA]
¢þ
>WENV170013880
AVBS01006992
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
162
91
-
Gly
CCC
[ENA]
¢þ
>WENV170013886
AVBS01009833
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
164
89
-
Phe
GAA
[ENA]
¢þ
>WENV170013856
AVBS01002132
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
167
241
+
His
GTG
[ENA]
¢þ
>WENV170013878
AVBS01006572
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
167
243
+
Glu
TTC
[ENA]
¢þ
>WENV170013855
AVBS01002099
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
169
93
-
His
GTG
[ENA]
¢þ
>WENV170013882
AVBS01007527
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
185
95
-
Ser
GCT
[ENA]
¢þ
>WENV170013859
AVBS01002732
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
188
263
+
Ala
GGC
[ENA]
¢þ
>WENV170013864
AVBS01003583
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
192
278
+
Tyr
GTA
[ENA]
¢þ
>WENV170013860
AVBS01002812
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
194
123
-
Gln
TTG
[ENA]
¢þ
>WENV170013850
AVBS01000830
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
212
131
-
Leu
CAG
[ENA]
¢þ
>WENV170013853
AVBS01001157
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
216
142
-
Gly
CCC
[ENA]
¢þ
>WENV170013871
AVBS01004604
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
220
148
-
Ala
TGC
[ENA]
¢þ
>WENV170013881
AVBS01007490
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
229
305
+
Thr
TGT
[ENA]
¢þ
>WENV170013868
AVBS01004086
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
260
331
+
Gln
CTG
[ENA]
¢þ
>WENV170013892
AVBS01009949
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
274
346
+
Glu
CTC
[ENA]
¢þ
>WENV170013883
AVBS01008624
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
276
201
-
Pro
GGG
[ENA]
¢þ
>WENV170013854
AVBS01001817
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
299
223
-
Pro
GGG
[ENA]
¢þ
>WENV170013852
AVBS01000967
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
311
383
+
Gln
CTG
[ENA]
¢þ
>WENV170013875
AVBS01005365
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
316
390
+
Lys
CTT
[ENA]
¢þ
>WENV170013865
AVBS01003583
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
316
390
+
Gly
TCC
[ENA]
¢þ
>WENV170013851
AVBS01000913
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
320
229
-
Ser
GCT
[ENA]
¢þ
>WENV170013874
AVBS01005305
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
347
271
-
Pro
GGG
[ENA]
¢þ
>WENV170013879
AVBS01006951
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
368
294
-
Pro
GGG
[ENA]
¢þ
>WENV170013849
AVBS01000084
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
370
443
+
Gln
CTG
[ENA]
¢þ
>WENV170013893
AVBS01009949
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
377
448
+
Glu
TTC
[ENA]
¢þ
>WENV170013894
AVBS01009949
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
497
571
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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