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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[AVBT] aquatic metagenome; brackish lake water
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170013911
AVBT01000330
[AVBT] aquatic metagenome; brackish lake water
1
72
+
Gln
TTG
[ENA]
¢þ
>WENV170013909
AVBT01000278
[AVBT] aquatic metagenome; brackish lake water
1
77
+
Arg
CCG
[ENA]
¢þ
>WENV170013912
AVBT01000336
[AVBT] aquatic metagenome; brackish lake water
81
5
-
Met
CAT
[ENA]
¢þ
>WENV170013905
AVBT01000112
[AVBT] aquatic metagenome; brackish lake water
98
23
-
Phe
GAA
[ENA]
¢þ
>WENV170013902
AVBT01000025
[AVBT] aquatic metagenome; brackish lake water
119
204
+
Tyr
GTA
[ENA]
¢þ
>WENV170013904
AVBT01000087
[AVBT] aquatic metagenome; brackish lake water
152
227
+
Thr
CGT
[ENA]
¢þ
>WENV170013907
AVBT01000206
[AVBT] aquatic metagenome; brackish lake water
167
241
+
His
GTG
[ENA]
¢þ
>WENV170013906
AVBT01000149
[AVBT] aquatic metagenome; brackish lake water
191
116
-
Leu
CAA
[ENA]
¢þ
>WENV170013910
AVBT01000294
[AVBT] aquatic metagenome; brackish lake water
213
289
+
His
GTG
[ENA]
¢þ
>WENV170013901
AVBT01000002
[AVBT] aquatic metagenome; brackish lake water
249
173
-
Cys
GCA
[ENA]
¢þ
>WENV170013903
AVBT01000056
[AVBT] aquatic metagenome; brackish lake water
316
391
+
Lys
CTT
[ENA]
¢þ
>WENV170013908
AVBT01000251
[AVBT] aquatic metagenome; brackish lake water
326
398
+
Thr
CGT
[ENA]
¢þ
>WENV170013900
AVBT01000002
[AVBT] aquatic metagenome; brackish lake water
379
306
-
Gln
TTG
[ENA]
¢þ
>WENV170013899
AVBT01000002
[AVBT] aquatic metagenome; brackish lake water
498
423
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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