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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[AVOA] gut metagenome; piglet diarrheic feces
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170014163
AVOA01001214
[AVOA] gut metagenome; piglet diarrheic feces
33
106
+
Met
CAT
[ENA]
¢þ
>WENV170014180
AVOA01005633
[AVOA] gut metagenome; piglet diarrheic feces
82
9
-
Lys
TTT
[ENA]
¢þ
>WENV170014181
AVOA01006973
[AVOA] gut metagenome; piglet diarrheic feces
124
37
-
Ser
GGA
[ENA]
¢þ
>WENV170014169
AVOA01002640
[AVOA] gut metagenome; piglet diarrheic feces
189
265
+
Pro
CGG
[ENA]
¢þ
>WENV170014176
AVOA01003320
[AVOA] gut metagenome; piglet diarrheic feces
207
281
+
Met
CAT
[ENA]
¢þ
>WENV170014168
AVOA01001643
[AVOA] gut metagenome; piglet diarrheic feces
239
163
-
Pro
TGG
[ENA]
¢þ
>WENV170014184
AVOA01007673
[AVOA] gut metagenome; piglet diarrheic feces
314
238
-
Met
CAT
[ENA]
¢þ
>WENV170014183
AVOA01007642
[AVOA] gut metagenome; piglet diarrheic feces
333
407
+
Thr
TGT
[ENA]
¢þ
>WENV170014167
AVOA01001643
[AVOA] gut metagenome; piglet diarrheic feces
368
282
-
Leu
CAG
[ENA]
¢þ
>WENV170014164
AVOA01001435
[AVOA] gut metagenome; piglet diarrheic feces
444
370
-
Thr
TGT
[ENA]
¢þ
>WENV170014166
AVOA01001643
[AVOA] gut metagenome; piglet diarrheic feces
464
389
-
His
GTG
[ENA]
¢þ
>WENV170014182
AVOA01007533
[AVOA] gut metagenome; piglet diarrheic feces
523
448
-
Glu
TTC
[ENA]
¢þ
>WENV170014165
AVOA01001643
[AVOA] gut metagenome; piglet diarrheic feces
599
523
-
Arg
CCG
[ENA]
¢þ
>WENV170014179
AVOA01004818
[AVOA] gut metagenome; piglet diarrheic feces
665
738
+
Gln
CTG
[ENA]
¢þ
>WENV170014162
AVOA01000800
[AVOA] gut metagenome; piglet diarrheic feces
868
941
+
Met
CAT
[ENA]
¢þ
>WENV170014161
AVOA01000130
[AVOA] gut metagenome; piglet diarrheic feces
1155
1228
+
His
GTG
[ENA]
¢þ
>WENV170014177
AVOA01004593
[AVOA] gut metagenome; piglet diarrheic feces
1638
1713
+
Ala
TGC
[ENA]
¢þ
>WENV170014178
AVOA01004593
[AVOA] gut metagenome; piglet diarrheic feces
1718
1794
+
Ile
GAT
[ENA]
¢þ
>WENV170014175
AVOA01002908
[AVOA] gut metagenome; piglet diarrheic feces
2841
2766
-
Met
CAT
[ENA]
¢þ
>WENV170014160
AVOA01000011
[AVOA] gut metagenome; piglet diarrheic feces
3510
3587
+
Val
TAC
[ENA]
¢þ
>WENV170014174
AVOA01002642
[AVOA] gut metagenome; piglet diarrheic feces
10983
10907
-
Gly
TCC
[ENA]
¢þ
>WENV170014173
AVOA01002642
[AVOA] gut metagenome; piglet diarrheic feces
11151
11075
-
Met
CAT
[ENA]
¢þ
>WENV170014172
AVOA01002642
[AVOA] gut metagenome; piglet diarrheic feces
11300
11225
-
Thr
TGT
[ENA]
¢þ
>WENV170014171
AVOA01002642
[AVOA] gut metagenome; piglet diarrheic feces
11690
11615
-
Pro
TGG
[ENA]
¢þ
>WENV170014170
AVOA01002642
[AVOA] gut metagenome; piglet diarrheic feces
11862
11788
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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