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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
HIT:
64 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170014361
AYRE01006749
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1
76
+
Gly
GCC
[ENA]
¢þ
>WENV170014320
AYRE01000115
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
52
134
+
Ser
GGA
[ENA]
¢þ
>WENV170014350
AYRE01005682
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV170014352
AYRE01005787
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
63
155
+
Ser
GCT
[ENA]
¢þ
>WENV170014360
AYRE01006535
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
79
4
-
Thr
TGT
[ENA]
¢þ
>WENV170014332
AYRE01000875
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
82
6
-
His
GTG
[ENA]
¢þ
>WENV170014357
AYRE01006075
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
85
10
-
Ala
TGC
[ENA]
¢þ
>WENV170014354
AYRE01005791
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
97
181
+
Leu
TAG
[ENA]
¢þ
>WENV170014346
AYRE01005248
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
99
191
+
Ser
GCT
[ENA]
¢þ
>WENV170014358
AYRE01006497
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
104
180
+
Trp
CCA
[ENA]
¢þ
>WENV170014348
AYRE01005359
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
129
54
-
Ala
TGC
[ENA]
¢þ
>WENV170014342
AYRE01003468
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
144
68
-
Met
CAT
[ENA]
¢þ
>WENV170014355
AYRE01005947
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
145
61
-
Tyr
GTA
[ENA]
¢þ
>WENV170014362
AYRE01006790
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
146
70
-
Ile
GAT
[ENA]
¢þ
>WENV170014353
AYRE01005787
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
162
238
+
Arg
ACG
[ENA]
¢þ
>WENV170014349
AYRE01005605
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
174
98
-
Thr
GGT
[ENA]
¢þ
>WENV170014331
AYRE01000875
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
175
99
-
Pro
TGG
[ENA]
¢þ
>WENV170014351
AYRE01005779
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
178
103
-
His
GTG
[ENA]
¢þ
>WENV170014339
AYRE01002927
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
183
99
-
Leu
GAG
[ENA]
¢þ
>WENV170014359
AYRE01006535
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
212
137
-
Phe
GAA
[ENA]
¢þ
>WENV170014341
AYRE01003468
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
246
157
-
Ser
GCT
[ENA]
¢þ
>WENV170014356
AYRE01006045
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
246
162
-
Tyr
GTA
[ENA]
¢þ
>WENV170014347
AYRE01005359
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
250
174
-
Ile
GAT
[ENA]
¢þ
>WENV170014345
AYRE01004407
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
286
211
-
Cys
GCA
[ENA]
¢þ
>WENV170014344
AYRE01004407
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
428
340
-
Ser
TGA
[ENA]
¢þ
>WENV170014343
AYRE01003834
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
442
517
+
Trp
CCA
[ENA]
¢þ
>WENV170014336
AYRE01001199
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
492
417
-
Phe
GAA
[ENA]
¢þ
>WENV170014340
AYRE01003275
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
513
589
+
Arg
TCT
[ENA]
¢þ
>WENV170014334
AYRE01001023
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
734
658
-
Leu
TAA
[ENA]
¢þ
>WENV170014303
AYRE01000002
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
787
870
+
Ser
CGA
[ENA]
¢þ
>WENV170014338
AYRE01002699
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
827
751
-
Ile
GAT
[ENA]
¢þ
>WENV170014337
AYRE01001501
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1438
1527
+
Ser
TGA
[ENA]
¢þ
>WENV170014326
AYRE01000483
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1445
1355
-
Ser
GGA
[ENA]
¢þ
>WENV170014315
AYRE01000024
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1520
1444
-
Met
CAT
[ENA]
¢þ
>WENV170014328
AYRE01000639
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1527
1452
-
Met
CAT
[ENA]
¢þ
>WENV170014335
AYRE01001125
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1745
1837
+
Ser
GCT
[ENA]
¢þ
>WENV170014333
AYRE01001013
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2018
2094
+
Arg
CCG
[ENA]
¢þ
>WENV170014327
AYRE01000562
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2207
2131
-
Pro
TGG
[ENA]
¢þ
>WENV170014330
AYRE01000834
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2303
2228
-
Ala
TGC
[ENA]
¢þ
>WENV170014325
AYRE01000198
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2377
2302
-
Glu
TTC
[ENA]
¢þ
>WENV170014329
AYRE01000722
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2530
2612
+
Ser
TGA
[ENA]
¢þ
>WENV170014312
AYRE01000014
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
3301
3226
-
Pro
TGG
[ENA]
¢þ
>WENV170014323
AYRE01000140
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
3585
3510
-
Glu
TTC
[ENA]
¢þ
>WENV170014322
AYRE01000140
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
3806
3731
-
Arg
TCT
[ENA]
¢þ
>WENV170014319
AYRE01000042
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
4663
4737
+
Met
CAT
[ENA]
¢þ
>WENV170014311
AYRE01000014
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
5827
5900
+
Gln
TTG
[ENA]
¢þ
>WENV170014309
AYRE01000009
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
6952
6877
-
Arg
CCT
[ENA]
¢þ
>WENV170014324
AYRE01000163
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
7630
7554
-
Lys
TTT
[ENA]
¢þ
>WENV170014307
AYRE01000007
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
8304
8377
+
Val
TAC
[ENA]
¢þ
>WENV170014321
AYRE01000116
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
9064
9150
+
Leu
CAA
[ENA]
¢þ
>WENV170014318
AYRE01000037
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
9296
9381
+
Ser
GCT
[ENA]
¢þ
>WENV170014313
AYRE01000021
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
10639
10712
+
Asn
GTT
[ENA]
¢þ
>WENV170014314
AYRE01000021
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
10769
10844
+
Ile
GAT
[ENA]
¢þ
>WENV170014317
AYRE01000032
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
13314
13241
-
Phe
GAA
[ENA]
¢þ
>WENV170014310
AYRE01000010
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
15176
15247
+
Cys
GCA
[ENA]
¢þ
>WENV170014316
AYRE01000026
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
15869
15940
+
Thr
TGT
[ENA]
¢þ
>WENV170014302
AYRE01000001
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
33076
32991
-
Leu
TAA
[ENA]
¢þ
>WENV170014308
AYRE01000007
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
33087
33168
+
Leu
CAA
[ENA]
¢þ
>WENV170014306
AYRE01000002
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
38052
37969
-
Leu
TAG
[ENA]
¢þ
>WENV170014305
AYRE01000002
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
52803
52729
-
His
GTG
[ENA]
¢þ
>WENV170014301
AYRE01000001
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
56808
56732
-
Lys
CTT
[ENA]
¢þ
>WENV170014300
AYRE01000001
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
59470
59398
-
Gln
CTG
[ENA]
¢þ
>WENV170014304
AYRE01000002
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
59688
59614
-
Trp
CCA
[ENA]
¢þ
>WENV170014299
AYRE01000001
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
80415
80342
-
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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