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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170014399
AYRF01022528
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2
86
+
Leu
TAG
[ENA]
¢þ
>WENV170014405
AYRF01027335
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
13
89
+
His
GTG
[ENA]
¢þ
>WENV170014406
AYRF01032262
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
20
106
+
Leu
CAA
[ENA]
¢þ
>WENV170014375
AYRF01005162
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
25
100
+
Ala
TGC
[ENA]
¢þ
>WENV170014397
AYRF01021711
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
29
104
+
Ala
GGC
[ENA]
¢þ
>WENV170014415
AYRF01042243
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
53
128
+
Phe
GAA
[ENA]
¢þ
>WENV170014410
AYRF01039300
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
56
132
+
Thr
GGT
[ENA]
¢þ
>WENV170014373
AYRF01003518
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
76
3
-
Cys
GCA
[ENA]
¢þ
>WENV170014372
AYRF01002886
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
80
5
-
Met
CAT
[ENA]
¢þ
>WENV170014400
AYRF01022838
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
98
9
-
Ser
GCT
[ENA]
¢þ
>WENV170014380
AYRF01007983
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
101
25
-
Arg
TCT
[ENA]
¢þ
>WENV170014395
AYRF01021369
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
101
25
-
Pro
GGG
[ENA]
¢þ
>WENV170014387
AYRF01015704
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
102
178
+
Met
CAT
[ENA]
¢þ
>WENV170014377
AYRF01005568
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
110
35
-
Gly
GCC
[ENA]
¢þ
>WENV170014408
AYRF01034651
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
118
191
+
Gly
CCC
[ENA]
¢þ
>WENV170014391
AYRF01019774
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
120
44
-
Met
CAT
[ENA]
¢þ
>WENV170014393
AYRF01020018
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
120
44
-
Arg
TCT
[ENA]
¢þ
>WENV170014412
AYRF01040246
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
121
195
+
Gln
TTG
[ENA]
¢þ
>WENV170014407
AYRF01034592
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
128
204
+
Asp
GTC
[ENA]
¢þ
>WENV170014368
AYRF01000859
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
141
66
-
His
GTG
[ENA]
¢þ
>WENV170014418
AYRF01046655
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
143
70
-
Gly
TCC
[ENA]
¢þ
>WENV170014386
AYRF01015074
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
147
221
+
Thr
GGT
[ENA]
¢þ
>WENV170014404
AYRF01027221
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
154
78
-
Met
CAT
[ENA]
¢þ
>WENV170014392
AYRF01019923
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
155
230
+
Ala
GGC
[ENA]
¢þ
>WENV170014403
AYRF01026227
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
157
82
-
Phe
GAA
[ENA]
¢þ
>WENV170014363
AYRF01000231
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
164
88
-
Arg
CCG
[ENA]
¢þ
>WENV170014414
AYRF01041983
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
166
91
-
Phe
GAA
[ENA]
¢þ
>WENV170014390
AYRF01019065
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
167
257
+
Ser
GGA
[ENA]
¢þ
>WENV170014388
AYRF01016733
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
176
261
+
Leu
CAG
[ENA]
¢þ
>WENV170014379
AYRF01007840
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
177
85
-
Ser
GCT
[ENA]
¢þ
>WENV170014401
AYRF01023353
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
178
252
+
Gln
TTG
[ENA]
¢þ
>WENV170014396
AYRF01021580
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
181
257
+
Pro
CGG
[ENA]
¢þ
>WENV170014417
AYRF01044187
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
184
108
-
Pro
CGG
[ENA]
¢þ
>WENV170014385
AYRF01012716
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
187
263
+
Pro
GGG
[ENA]
¢þ
>WENV170014416
AYRF01042368
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
206
131
-
Trp
CCA
[ENA]
¢þ
>WENV170014398
AYRF01022264
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
207
282
+
Ala
GGC
[ENA]
¢þ
>WENV170014411
AYRF01040174
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
208
119
-
Ser
CGA
[ENA]
¢þ
>WENV170014413
AYRF01041610
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
213
138
-
Ala
GGC
[ENA]
¢þ
>WENV170014402
AYRF01024799
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
214
140
-
Gln
TTG
[ENA]
¢þ
>WENV170014394
AYRF01020214
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
216
124
-
Ser
GCT
[ENA]
¢þ
>WENV170014409
AYRF01035027
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
232
157
-
Gly
GCC
[ENA]
¢þ
>WENV170014383
AYRF01010868
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
240
164
-
Arg
TCT
[ENA]
¢þ
>WENV170014376
AYRF01005547
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
262
187
-
Arg
CCT
[ENA]
¢þ
>WENV170014367
AYRF01000859
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
267
191
-
Arg
CCG
[ENA]
¢þ
>WENV170014384
AYRF01012342
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
288
214
-
Arg
CCT
[ENA]
¢þ
>WENV170014382
AYRF01010606
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
296
386
+
Ser
TGA
[ENA]
¢þ
>WENV170014389
AYRF01018501
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
316
230
-
Leu
CAG
[ENA]
¢þ
>WENV170014374
AYRF01005109
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
404
488
+
Leu
GAG
[ENA]
¢þ
>WENV170014381
AYRF01010193
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
412
336
-
Met
CAT
[ENA]
¢þ
>WENV170014378
AYRF01006372
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
414
339
-
Thr
CGT
[ENA]
¢þ
>WENV170014370
AYRF01002479
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
420
345
-
Ala
GGC
[ENA]
¢þ
>WENV170014366
AYRF01000755
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
587
511
-
Val
TAC
[ENA]
¢þ
>WENV170014364
AYRF01000498
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
621
705
+
Leu
CAA
[ENA]
¢þ
>WENV170014371
AYRF01002488
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
685
596
-
Ser
TGA
[ENA]
¢þ
>WENV170014365
AYRF01000755
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
699
624
-
Arg
TCT
[ENA]
¢þ
>WENV170014369
AYRF01001032
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1013
929
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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