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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
HIT:
95 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170014496
AYRG01003268
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
8
82
+
Asn
GTT
[ENA]
¢þ
>WENV170014464
AYRG01000852
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
8
84
+
Arg
CCT
[ENA]
¢þ
>WENV170014470
AYRG01001050
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
30
114
+
Leu
GAG
[ENA]
¢þ
>WENV170014430
AYRG01000063
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
69
145
+
Asp
GTC
[ENA]
¢þ
>WENV170014505
AYRG01004677
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
75
1
-
Gln
TTG
[ENA]
¢þ
>WENV170014450
AYRG01000277
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
76
1
-
Lys
TTT
[ENA]
¢þ
>WENV170014502
AYRG01004415
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
76
147
+
Asn
GTT
[ENA]
¢þ
>WENV170014507
AYRG01005179
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
78
151
+
Pro
GGG
[ENA]
¢þ
>WENV170014494
AYRG01003244
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
85
11
-
Gln
TTG
[ENA]
¢þ
>WENV170014513
AYRG01005558
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
94
164
+
Cys
GCA
[ENA]
¢þ
>WENV170014455
AYRG01000575
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
95
179
+
Leu
TAG
[ENA]
¢þ
>WENV170014482
AYRG01002040
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
123
198
+
Trp
CCA
[ENA]
¢þ
>WENV170014512
AYRG01005516
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
137
65
-
Trp
CCA
[ENA]
¢þ
>WENV170014483
AYRG01002309
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
140
216
+
Ile
GAT
[ENA]
¢þ
>WENV170014497
AYRG01004225
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
141
217
+
Arg
TCT
[ENA]
¢þ
>WENV170014469
AYRG01000954
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
143
67
-
Pro
TGG
[ENA]
¢þ
>WENV170014423
AYRG01000017
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
143
68
-
Pro
TGG
[ENA]
¢þ
>WENV170014510
AYRG01005331
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
154
81
-
Met
CAT
[ENA]
¢þ
>WENV170014503
AYRG01004415
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
156
227
+
Glu
TTC
[ENA]
¢þ
>WENV170014480
AYRG01001882
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
158
234
+
Arg
ACG
[ENA]
¢þ
>WENV170014467
AYRG01000932
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
158
245
+
Ser
GGA
[ENA]
¢þ
>WENV170014511
AYRG01005487
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
162
88
-
Gly
GCC
[ENA]
¢þ
>WENV170014439
AYRG01000115
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
166
240
+
Thr
GGT
[ENA]
¢þ
>WENV170014445
AYRG01000141
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
176
86
-
Ser
GGA
[ENA]
¢þ
>WENV170014438
AYRG01000088
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
176
86
-
Ser
GCT
[ENA]
¢þ
>WENV170014493
AYRG01002914
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
185
109
-
Val
GAC
[ENA]
¢þ
>WENV170014463
AYRG01000803
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
185
110
-
Ala
GGC
[ENA]
¢þ
>WENV170014508
AYRG01005260
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
188
112
-
Met
CAT
[ENA]
¢þ
>WENV170014495
AYRG01003258
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
193
268
+
Ala
TGC
[ENA]
¢þ
>WENV170014501
AYRG01004308
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
216
140
-
His
GTG
[ENA]
¢þ
>WENV170014468
AYRG01000954
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
220
145
-
Asn
GTT
[ENA]
¢þ
>WENV170014492
AYRG01002732
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
223
148
-
Thr
GGT
[ENA]
¢þ
>WENV170014499
AYRG01004232
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
231
156
-
Ala
TGC
[ENA]
¢þ
>WENV170014476
AYRG01001456
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
244
160
-
Tyr
GTA
[ENA]
¢þ
>WENV170014484
AYRG01002309
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
253
328
+
Ala
TGC
[ENA]
¢þ
>WENV170014509
AYRG01005331
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
255
183
-
Thr
TGT
[ENA]
¢þ
>WENV170014472
AYRG01001211
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
255
330
+
Thr
TGT
[ENA]
¢þ
>WENV170014506
AYRG01004932
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
295
210
-
Leu
CAA
[ENA]
¢þ
>WENV170014504
AYRG01004445
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
307
233
-
Ala
TGC
[ENA]
¢þ
>WENV170014491
AYRG01002732
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
316
243
-
Gly
TCC
[ENA]
¢þ
>WENV170014500
AYRG01004308
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
317
242
-
Arg
TCT
[ENA]
¢þ
>WENV170014444
AYRG01000141
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
320
233
-
Ser
TGA
[ENA]
¢þ
>WENV170014498
AYRG01004232
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170014477
AYRG01001643
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
364
288
-
Arg
CCT
[ENA]
¢þ
>WENV170014490
AYRG01002732
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
420
336
-
Tyr
GTA
[ENA]
¢þ
>WENV170014485
AYRG01002424
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
496
410
-
Leu
GAG
[ENA]
¢þ
>WENV170014447
AYRG01000173
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
605
680
+
Glu
TTC
[ENA]
¢þ
>WENV170014488
AYRG01002558
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
696
612
-
Leu
TAG
[ENA]
¢þ
>WENV170014489
AYRG01002634
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
813
889
+
Ile
GAT
[ENA]
¢þ
>WENV170014487
AYRG01002558
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
821
746
-
His
GTG
[ENA]
¢þ
>WENV170014479
AYRG01001804
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
854
779
-
Phe
GAA
[ENA]
¢þ
>WENV170014486
AYRG01002453
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
858
785
-
Cys
GCA
[ENA]
¢þ
>WENV170014473
AYRG01001301
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
872
796
-
Pro
GGG
[ENA]
¢þ
>WENV170014481
AYRG01002036
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
921
832
-
Ser
GGA
[ENA]
¢þ
>WENV170014461
AYRG01000776
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1080
1155
+
Cys
GCA
[ENA]
¢þ
>WENV170014478
AYRG01001795
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1271
1344
+
Pro
CGG
[ENA]
¢þ
>WENV170014465
AYRG01000869
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1397
1473
+
Met
CAT
[ENA]
¢þ
>WENV170014449
AYRG01000205
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1748
1833
+
Leu
AAG
[ENA]
¢þ
>WENV170014440
AYRG01000115
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170014422
AYRG01000010
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1800
1876
+
Arg
TCG
[ENA]
¢þ
>WENV170014475
AYRG01001355
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1844
1920
+
Met
CAT
[ENA]
¢þ
>WENV170014474
AYRG01001314
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1943
2024
+
Tyr
GTA
[ENA]
¢þ
>WENV170014458
AYRG01000613
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2036
2112
+
Arg
CCG
[ENA]
¢þ
>WENV170014431
AYRG01000066
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2052
2126
+
Thr
GGT
[ENA]
¢þ
>WENV170014471
AYRG01001181
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2211
2136
-
Met
CAT
[ENA]
¢þ
>WENV170014462
AYRG01000781
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2213
2300
+
Ser
TGA
[ENA]
¢þ
>WENV170014466
AYRG01000926
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2843
2757
-
Leu
CAG
[ENA]
¢þ
>WENV170014433
AYRG01000072
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
3575
3501
-
Val
GAC
[ENA]
¢þ
>WENV170014452
AYRG01000372
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
4152
4077
-
Thr
GGT
[ENA]
¢þ
>WENV170014460
AYRG01000616
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
4184
4110
-
Cys
GCA
[ENA]
¢þ
>WENV170014459
AYRG01000616
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
4320
4232
-
Ser
TGA
[ENA]
¢þ
>WENV170014457
AYRG01000592
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
4467
4393
-
Gln
TTG
[ENA]
¢þ
>WENV170014456
AYRG01000592
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
4557
4482
-
Thr
TGT
[ENA]
¢þ
>WENV170014454
AYRG01000503
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
5401
5325
-
Arg
ACG
[ENA]
¢þ
>WENV170014453
AYRG01000376
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
5544
5460
-
Leu
GAG
[ENA]
¢þ
>WENV170014432
AYRG01000072
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
5910
5834
-
Pro
GGG
[ENA]
¢þ
>WENV170014451
AYRG01000360
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
5949
6025
+
Met
CAT
[ENA]
¢þ
>WENV170014441
AYRG01000120
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
8788
8699
-
Ser
CGA
[ENA]
¢þ
>WENV170014448
AYRG01000185
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
11812
11725
-
Ser
GGA
[ENA]
¢þ
>WENV170014429
AYRG01000047
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
12231
12156
-
Arg
CCT
[ENA]
¢þ
>WENV170014446
AYRG01000171
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
14127
14052
-
Trp
CCA
[ENA]
¢þ
>WENV170014428
AYRG01000043
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
18418
18334
-
Leu
CAA
[ENA]
¢þ
>WENV170014427
AYRG01000041
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
20273
20201
-
Thr
CGT
[ENA]
¢þ
>WENV170014442
AYRG01000129
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
20543
20633
+
Ser
GCT
[ENA]
¢þ
>WENV170014443
AYRG01000129
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
20664
20740
+
Met
CAT
[ENA]
¢þ
>WENV170014437
AYRG01000076
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
31223
31139
-
Leu
TAG
[ENA]
¢þ
>WENV170014436
AYRG01000076
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
31348
31272
-
Arg
TCT
[ENA]
¢þ
>WENV170014435
AYRG01000076
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
31434
31358
-
His
GTG
[ENA]
¢þ
>WENV170014434
AYRG01000076
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
31538
31461
-
Pro
TGG
[ENA]
¢þ
>WENV170014426
AYRG01000040
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
31551
31478
-
Val
GAC
[ENA]
¢þ
>WENV170014425
AYRG01000026
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
36265
36340
+
Glu
TTC
[ENA]
¢þ
>WENV170014424
AYRG01000023
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
37003
36919
-
Leu
CAA
[ENA]
¢þ
>WENV170014419
AYRG01000003
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
72484
72409
-
Arg
TCG
[ENA]
¢þ
>WENV170014421
AYRG01000005
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
93347
93272
-
Ala
GGC
[ENA]
¢þ
>WENV170014420
AYRG01000004
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
100062
99986
-
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK