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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
HIT:
91 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170014590
AYRH01023448
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1
75
+
Phe
GAA
[ENA]
¢þ
>WENV170014563
AYRH01010480
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
3
78
+
Ala
TGC
[ENA]
¢þ
>WENV170014564
AYRH01010482
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
4
79
+
Ala
GGC
[ENA]
¢þ
>WENV170014568
AYRH01011804
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
6
95
+
Ser
CGA
[ENA]
¢þ
>WENV170014548
AYRH01005030
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
7
83
+
Arg
TCT
[ENA]
¢þ
>WENV170014518
AYRH01000282
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
23
98
+
Phe
GAA
[ENA]
¢þ
>WENV170014602
AYRH01033826
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
25
98
+
Cys
GCA
[ENA]
¢þ
>WENV170014597
AYRH01027363
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
25
99
+
Thr
GGT
[ENA]
¢þ
>WENV170014541
AYRH01002109
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
52
127
+
Ala
TGC
[ENA]
¢þ
>WENV170014539
AYRH01001944
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
60
136
+
Asp
GTC
[ENA]
¢þ
>WENV170014580
AYRH01017723
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
66
141
+
Gly
GCC
[ENA]
¢þ
>WENV170014601
AYRH01032773
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
73
-1
-
Met
CAT
[ENA]
¢þ
>WENV170014583
AYRH01019191
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV170014587
AYRH01020484
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV170014604
AYRH01035330
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV170014595
AYRH01026585
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
84
159
+
Asn
GTT
[ENA]
¢þ
>WENV170014600
AYRH01031973
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
86
2
-
Tyr
GTA
[ENA]
¢þ
>WENV170014589
AYRH01023316
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
102
18
-
Leu
GAG
[ENA]
¢þ
>WENV170014603
AYRH01033826
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
105
191
+
Leu
TAA
[ENA]
¢þ
>WENV170014599
AYRH01031832
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
109
33
-
Ile
GAT
[ENA]
¢þ
>WENV170014562
AYRH01009725
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
114
189
+
Thr
TGT
[ENA]
¢þ
>WENV170014556
AYRH01007522
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
122
46
-
Met
CAT
[ENA]
¢þ
>WENV170014593
AYRH01026213
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
122
196
+
Val
GAC
[ENA]
¢þ
>WENV170014586
AYRH01020282
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
124
40
-
Leu
TAG
[ENA]
¢þ
>WENV170014529
AYRH01001160
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
128
203
+
Val
TAC
[ENA]
¢þ
>WENV170014551
AYRH01006094
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
130
55
-
Asn
GTT
[ENA]
¢þ
>WENV170014582
AYRH01019145
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
131
56
-
Lys
TTT
[ENA]
¢þ
>WENV170014560
AYRH01009337
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
133
209
+
Met
CAT
[ENA]
¢þ
>WENV170014537
AYRH01001924
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
139
63
-
Pro
GGG
[ENA]
¢þ
>WENV170014591
AYRH01024367
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
140
64
-
Ile
GAT
[ENA]
¢þ
>WENV170014572
AYRH01014425
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
142
66
-
Pro
TGG
[ENA]
¢þ
>WENV170014578
AYRH01016871
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
164
90
-
Gly
GCC
[ENA]
¢þ
>WENV170014594
AYRH01026373
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
170
244
+
Glu
TTC
[ENA]
¢þ
>WENV170014573
AYRH01014708
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
190
267
+
Val
TAC
[ENA]
¢þ
>WENV170014576
AYRH01016039
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
199
113
-
Leu
CAG
[ENA]
¢þ
>WENV170014565
AYRH01010645
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
199
123
-
Arg
CCG
[ENA]
¢þ
>WENV170014598
AYRH01029300
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
199
124
-
Ala
GGC
[ENA]
¢þ
>WENV170014592
AYRH01025244
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
208
132
-
Arg
TCT
[ENA]
¢þ
>WENV170014581
AYRH01019145
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
209
134
-
Glu
TTC
[ENA]
¢þ
>WENV170014557
AYRH01007920
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
212
139
-
Phe
GAA
[ENA]
¢þ
>WENV170014547
AYRH01004706
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
223
308
+
Ser
GGA
[ENA]
¢þ
>WENV170014584
AYRH01019806
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
224
151
-
Gly
TCC
[ENA]
¢þ
>WENV170014555
AYRH01006848
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
225
152
-
Gln
TTG
[ENA]
¢þ
>WENV170014575
AYRH01015260
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
228
312
+
Leu
TAG
[ENA]
¢þ
>WENV170014570
AYRH01013105
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
231
155
-
Ile
GAT
[ENA]
¢þ
>WENV170014596
AYRH01027075
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
233
157
-
Pro
GGG
[ENA]
¢þ
>WENV170014579
AYRH01017535
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
237
312
+
Gln
TTG
[ENA]
¢þ
>WENV170014588
AYRH01022794
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
240
157
-
Leu
TAG
[ENA]
¢þ
>WENV170014554
AYRH01006798
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
245
321
+
Val
GAC
[ENA]
¢þ
>WENV170014567
AYRH01011783
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
253
329
+
His
GTG
[ENA]
¢þ
>WENV170014550
AYRH01005545
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
267
342
+
Thr
CGT
[ENA]
¢þ
>WENV170014585
AYRH01020081
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
270
197
-
Gly
CCC
[ENA]
¢þ
>WENV170014558
AYRH01008062
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
274
349
+
Lys
TTT
[ENA]
¢þ
>WENV170014569
AYRH01012779
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
287
213
-
Glu
TTC
[ENA]
¢þ
>WENV170014577
AYRH01016871
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
287
213
-
Gly
GCC
[ENA]
¢þ
>WENV170014553
AYRH01006620
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
299
224
-
Ala
GGC
[ENA]
¢þ
>WENV170014571
AYRH01014425
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
303
228
-
His
GTG
[ENA]
¢þ
>WENV170014561
AYRH01009337
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
307
391
+
Leu
TAG
[ENA]
¢þ
>WENV170014530
AYRH01001160
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
311
387
+
Asp
GTC
[ENA]
¢þ
>WENV170014574
AYRH01014859
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
313
238
-
Ala
TGC
[ENA]
¢þ
>WENV170014533
AYRH01001324
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
316
240
-
Arg
ACG
[ENA]
¢þ
>WENV170014566
AYRH01010688
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
339
414
+
Phe
GAA
[ENA]
¢þ
>WENV170014515
AYRH01000159
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
349
423
+
Thr
GGT
[ENA]
¢þ
>WENV170014532
AYRH01001199
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
352
426
+
Gln
TTG
[ENA]
¢þ
>WENV170014536
AYRH01001811
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
418
345
-
Cys
GCA
[ENA]
¢þ
>WENV170014559
AYRH01008169
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
440
364
-
Met
CAT
[ENA]
¢þ
>WENV170014552
AYRH01006561
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
469
396
-
Gln
CTG
[ENA]
¢þ
>WENV170014545
AYRH01003751
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
472
546
+
Val
GAC
[ENA]
¢þ
>WENV170014540
AYRH01001986
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
497
580
+
Tyr
GTA
[ENA]
¢þ
>WENV170014538
AYRH01001938
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
503
414
-
Ser
TGA
[ENA]
¢þ
>WENV170014526
AYRH01000903
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
516
589
+
Gly
CCC
[ENA]
¢þ
>WENV170014549
AYRH01005133
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
584
508
-
Pro
TGG
[ENA]
¢þ
>WENV170014535
AYRH01001635
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
588
512
-
Met
CAT
[ENA]
¢þ
>WENV170014544
AYRH01003219
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
596
507
-
Ser
TGA
[ENA]
¢þ
>WENV170014534
AYRH01001568
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
598
522
-
Arg
TCT
[ENA]
¢þ
>WENV170014546
AYRH01004613
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
617
543
-
Ala
TGC
[ENA]
¢þ
>WENV170014527
AYRH01001012
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
617
544
-
Gly
TCC
[ENA]
¢þ
>WENV170014542
AYRH01002565
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
689
764
+
Lys
TTT
[ENA]
¢þ
>WENV170014523
AYRH01000400
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
736
660
-
His
GTG
[ENA]
¢þ
>WENV170014543
AYRH01002941
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
763
674
-
Ser
CGA
[ENA]
¢þ
>WENV170014517
AYRH01000273
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
932
857
-
Trp
CCA
[ENA]
¢þ
>WENV170014524
AYRH01000632
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
944
871
-
Cys
GCA
[ENA]
¢þ
>WENV170014531
AYRH01001172
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
973
899
-
Gln
TTG
[ENA]
¢þ
>WENV170014525
AYRH01000795
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
998
1082
+
Leu
TAA
[ENA]
¢þ
>WENV170014528
AYRH01001015
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1064
1139
+
Trp
CCA
[ENA]
¢þ
>WENV170014519
AYRH01000331
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1182
1106
-
Met
CAT
[ENA]
¢þ
>WENV170014521
AYRH01000362
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1231
1307
+
Arg
CCT
[ENA]
¢þ
>WENV170014522
AYRH01000378
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1313
1238
-
Thr
TGT
[ENA]
¢þ
>WENV170014520
AYRH01000339
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1566
1490
-
Arg
CCG
[ENA]
¢þ
>WENV170014516
AYRH01000214
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1600
1514
-
Leu
CAG
[ENA]
¢þ
>WENV170014514
AYRH01000024
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
3612
3696
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK