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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170014823
AZIB01004085
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
1
87
+
Leu
TAA
[ENA]
¢þ
>WENV170014811
AZIB01002166
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
93
17
-
Met
CAT
[ENA]
¢þ
>WENV170014784
AZIB01000154
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
103
179
+
Ile
GAT
[ENA]
¢þ
>WENV170014796
AZIB01001134
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
129
53
-
Arg
TCG
[ENA]
¢þ
>WENV170014814
AZIB01002740
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
136
214
+
Pro
GGG
[ENA]
¢þ
>WENV170014813
AZIB01002328
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
145
61
-
Ser
GGA
[ENA]
¢þ
>WENV170014797
AZIB01001241
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
145
220
+
Ala
GGC
[ENA]
¢þ
>WENV170014808
AZIB01001745
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
154
230
+
Pro
TGG
[ENA]
¢þ
>WENV170014790
AZIB01000824
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
174
250
+
Ile
GAT
[ENA]
¢þ
>WENV170014809
AZIB01001745
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
274
350
+
Arg
TCT
[ENA]
¢þ
>WENV170014801
AZIB01001287
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
275
350
+
Arg
CCG
[ENA]
¢þ
>WENV170014798
AZIB01001241
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
278
353
+
Glu
TTC
[ENA]
¢þ
>WENV170014799
AZIB01001270
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
282
358
+
Val
GAC
[ENA]
¢þ
>WENV170014803
AZIB01001391
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
285
209
-
Arg
ACG
[ENA]
¢þ
>WENV170014819
AZIB01003482
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
286
361
+
Pro
TGG
[ENA]
¢þ
>WENV170014800
AZIB01001283
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
296
371
+
Asn
GTT
[ENA]
¢þ
>WENV170014785
AZIB01000154
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
300
375
+
Ala
TGC
[ENA]
¢þ
>WENV170014812
AZIB01002272
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
319
393
+
Val
GAC
[ENA]
¢þ
>WENV170014817
AZIB01003257
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
377
302
-
Phe
GAA
[ENA]
¢þ
>WENV170014793
AZIB01000826
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
414
338
-
Met
CAT
[ENA]
¢þ
>WENV170014816
AZIB01002994
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
424
348
-
Ile
GAT
[ENA]
¢þ
>WENV170014802
AZIB01001391
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
428
337
-
Ser
GCT
[ENA]
¢þ
>WENV170014791
AZIB01000824
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
437
512
+
Ala
TGC
[ENA]
¢þ
>WENV170014815
AZIB01002835
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
481
405
-
Met
CAT
[ENA]
¢þ
>WENV170014810
AZIB01001745
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
509
584
+
His
GTG
[ENA]
¢þ
>WENV170014787
AZIB01000666
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
543
468
-
Ala
TGC
[ENA]
¢þ
>WENV170014792
AZIB01000826
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
583
498
-
Leu
GAG
[ENA]
¢þ
>WENV170014822
AZIB01003773
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
606
535
-
Gly
GCC
[ENA]
¢þ
>WENV170014786
AZIB01000576
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
609
535
-
Met
CAT
[ENA]
¢þ
>WENV170014818
AZIB01003275
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
653
581
-
Gln
TTG
[ENA]
¢þ
>WENV170014824
AZIB01004184
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
664
750
+
Leu
CAA
[ENA]
¢þ
>WENV170014821
AZIB01003773
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
691
617
-
Phe
GAA
[ENA]
¢þ
>WENV170014820
AZIB01003773
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
831
755
-
Val
GAC
[ENA]
¢þ
>WENV170014795
AZIB01000926
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
1701
1626
-
Glu
TTC
[ENA]
¢þ
>WENV170014788
AZIB01000734
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
1865
1790
-
Lys
TTT
[ENA]
¢þ
>WENV170014794
AZIB01000926
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
1896
1821
-
Ala
GGC
[ENA]
¢þ
>WENV170014807
AZIB01001733
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
2720
2646
-
Gln
TTG
[ENA]
¢þ
>WENV170014804
AZIB01001415
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3080
3169
+
Ser
TGA
[ENA]
¢þ
>WENV170014805
AZIB01001424
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3094
3170
+
Arg
CCT
[ENA]
¢þ
>WENV170014778
AZIB01000034
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3119
3194
+
Thr
TGT
[ENA]
¢þ
>WENV170014825
AZIB01004405
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3148
3072
-
Pro
GGG
[ENA]
¢þ
>WENV170014779
AZIB01000034
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3318
3402
+
Tyr
GTA
[ENA]
¢þ
>WENV170014780
AZIB01000034
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3436
3510
+
Gly
TCC
[ENA]
¢þ
>WENV170014781
AZIB01000034
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3527
3602
+
Thr
GGT
[ENA]
¢þ
>WENV170014782
AZIB01000081
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3638
3724
+
Leu
CAG
[ENA]
¢þ
>WENV170014806
AZIB01001497
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
3874
3950
+
Met
CAT
[ENA]
¢þ
>WENV170014783
AZIB01000110
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
4588
4663
+
Asn
GTT
[ENA]
¢þ
>WENV170014789
AZIB01000822
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
6743
6818
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK