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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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|
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|
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HOW TO USE
tRNA gene List
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
HIT:
69 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170015058
AZID01000078
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
65
141
+
Arg
CCG
[ENA]
¢þ
>WENV170015099
AZID01007765
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
73
1
-
Gly
GCC
[ENA]
¢þ
>WENV170015063
AZID01000409
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
78
153
+
Trp
CCA
[ENA]
¢þ
>WENV170015091
AZID01003598
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
92
17
-
Gly
TCC
[ENA]
¢þ
>WENV170015104
AZID01011524
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
92
167
+
Asn
GTT
[ENA]
¢þ
>WENV170015061
AZID01000344
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
95
170
+
Trp
CCA
[ENA]
¢þ
>WENV170015124
AZID01016463
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
105
187
+
Leu
TAG
[ENA]
¢þ
>WENV170015098
AZID01007684
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
106
22
-
Leu
TAG
[ENA]
¢þ
>WENV170015083
AZID01002630
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
117
42
-
Asp
GTC
[ENA]
¢þ
>WENV170015060
AZID01000282
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
130
55
-
Val
CAC
[ENA]
¢þ
>WENV170015108
AZID01012651
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
143
232
+
Ser
GGA
[ENA]
¢þ
>WENV170015068
AZID01001097
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
147
223
+
Ala
TGC
[ENA]
¢þ
>WENV170015103
AZID01010085
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
153
78
-
Lys
TTT
[ENA]
¢þ
>WENV170015064
AZID01000570
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
156
82
-
Val
CAC
[ENA]
¢þ
>WENV170015089
AZID01003180
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
157
82
-
Lys
CTT
[ENA]
¢þ
>WENV170015125
AZID01016674
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
170
99
-
Cys
GCA
[ENA]
¢þ
>WENV170015069
AZID01001161
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
190
265
+
Lys
TTT
[ENA]
¢þ
>WENV170015065
AZID01000719
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
192
116
-
Met
CAT
[ENA]
¢þ
>WENV170015073
AZID01001348
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
194
120
-
Thr
GGT
[ENA]
¢þ
>WENV170015095
AZID01004302
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
195
120
-
Met
CAT
[ENA]
¢þ
>WENV170015078
AZID01002057
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
201
277
+
Pro
TGG
[ENA]
¢þ
>WENV170015074
AZID01001599
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
209
133
-
Asp
GTC
[ENA]
¢þ
>WENV170015067
AZID01001046
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
210
134
-
Pro
CGG
[ENA]
¢þ
>WENV170015082
AZID01002528
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
228
302
+
Met
CAT
[ENA]
¢þ
>WENV170015112
AZID01014099
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
247
174
-
Gln
CTG
[ENA]
¢þ
>WENV170015088
AZID01003180
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
267
192
-
His
GTG
[ENA]
¢þ
>WENV170015105
AZID01012144
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
271
357
+
Leu
CAA
[ENA]
¢þ
>WENV170015109
AZID01012919
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
319
245
-
Gln
TTG
[ENA]
¢þ
>WENV170015097
AZID01006965
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
325
249
-
Pro
GGG
[ENA]
¢þ
>WENV170015111
AZID01013835
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
344
269
-
Thr
CGT
[ENA]
¢þ
>WENV170015062
AZID01000403
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
345
270
-
Phe
GAA
[ENA]
¢þ
>WENV170015101
AZID01008418
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
356
282
-
Arg
CCT
[ENA]
¢þ
>WENV170015110
AZID01013650
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
358
271
-
Leu
TAA
[ENA]
¢þ
>WENV170015057
AZID01000010
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
363
287
-
Pro
TGG
[ENA]
¢þ
>WENV170015059
AZID01000199
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
378
294
-
Leu
GAG
[ENA]
¢þ
>WENV170015100
AZID01008397
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
381
305
-
Val
GAC
[ENA]
¢þ
>WENV170015120
AZID01014820
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
383
456
+
Lys
TTT
[ENA]
¢þ
>WENV170015072
AZID01001348
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
402
326
-
Gly
TCC
[ENA]
¢þ
>WENV170015080
AZID01002122
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
405
321
-
Leu
GAG
[ENA]
¢þ
>WENV170015090
AZID01003510
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
406
482
+
Pro
GGG
[ENA]
¢þ
>WENV170015087
AZID01003135
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
407
317
-
Ser
CGA
[ENA]
¢þ
>WENV170015102
AZID01008967
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
424
499
+
Val
GAC
[ENA]
¢þ
>WENV170015075
AZID01001763
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
471
396
-
Ala
TGC
[ENA]
¢þ
>WENV170015121
AZID01014820
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
478
564
+
Leu
GAG
[ENA]
¢þ
>WENV170015071
AZID01001348
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
498
414
-
Tyr
GTA
[ENA]
¢þ
>WENV170015119
AZID01014612
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
563
637
+
Asn
GTT
[ENA]
¢þ
>WENV170015093
AZID01003862
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
570
495
-
Thr
CGT
[ENA]
¢þ
>WENV170015066
AZID01000889
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
574
499
-
Ala
TGC
[ENA]
¢þ
>WENV170015116
AZID01014485
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
576
502
-
Lys
TTT
[ENA]
¢þ
>WENV170015081
AZID01002152
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
674
599
-
Lys
TTT
[ENA]
¢þ
>WENV170015106
AZID01012466
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
694
767
+
Arg
CCT
[ENA]
¢þ
>WENV170015107
AZID01012624
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
712
787
+
Ile
GAT
[ENA]
¢þ
>WENV170015079
AZID01002104
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
755
831
+
Met
CAT
[ENA]
¢þ
>WENV170015115
AZID01014157
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
778
701
-
His
GTG
[ENA]
¢þ
>WENV170015117
AZID01014595
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
858
934
+
Cys
GCA
[ENA]
¢þ
>WENV170015114
AZID01014157
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
870
794
-
Arg
TCT
[ENA]
¢þ
>WENV170015118
AZID01014595
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
940
1016
+
Pro
TGG
[ENA]
¢þ
>WENV170015077
AZID01001968
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
943
1018
+
His
GTG
[ENA]
¢þ
>WENV170015113
AZID01014157
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
989
918
-
Gly
TCC
[ENA]
¢þ
>WENV170015076
AZID01001837
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1016
1103
+
Leu
TAA
[ENA]
¢þ
>WENV170015094
AZID01003904
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1021
929
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170015096
AZID01004303
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1083
1010
-
Thr
GGT
[ENA]
¢þ
>WENV170015122
AZID01015575
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1184
1108
-
Met
CAT
[ENA]
¢þ
>WENV170015086
AZID01003125
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1316
1394
+
Ala
CGC
[ENA]
¢þ
>WENV170015085
AZID01002945
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1319
1403
+
Leu
TAG
[ENA]
¢þ
>WENV170015070
AZID01001287
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1359
1269
-
Ser
GGA
[ENA]
¢þ
>WENV170015123
AZID01016089
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1437
1511
+
Val
GAC
[ENA]
¢þ
>WENV170015092
AZID01003842
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1601
1527
-
Gln
TTG
[ENA]
¢þ
>WENV170015084
AZID01002829
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
1974
2050
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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