This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[CCXY] groundwater metagenome; sulfidic groundwater
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170025835
CCXY01000138
[CCXY] groundwater metagenome; sulfidic groundwater
118
194
+
Arg
CCT
[ENA]
¢þ
>WENV170025823
CCXY01000064
[CCXY] groundwater metagenome; sulfidic groundwater
424
495
+
Thr
CGT
[ENA]
¢þ
>WENV170025853
CCXY01000213
[CCXY] groundwater metagenome; sulfidic groundwater
652
580
-
Thr
TGT
[ENA]
¢þ
>WENV170025841
CCXY01000145
[CCXY] groundwater metagenome; sulfidic groundwater
782
867
+
Ser
CGA
[ENA]
¢þ
>WENV170025839
CCXY01000143
[CCXY] groundwater metagenome; sulfidic groundwater
928
844
-
Ser
GCT
[ENA]
¢þ
>WENV170025852
CCXY01000213
[CCXY] groundwater metagenome; sulfidic groundwater
955
881
-
Pro
GGG
[ENA]
¢þ
>WENV170025851
CCXY01000213
[CCXY] groundwater metagenome; sulfidic groundwater
1074
991
-
Leu
GAG
[ENA]
¢þ
>WENV170025866
CCXY01000455
[CCXY] groundwater metagenome; sulfidic groundwater
1811
1735
-
Arg
TCT
[ENA]
¢þ
>WENV170025856
CCXY01000267
[CCXY] groundwater metagenome; sulfidic groundwater
1824
1894
+
Cys
GCA
[ENA]
¢þ
>WENV170025825
CCXY01000073
[CCXY] groundwater metagenome; sulfidic groundwater
2018
2092
+
Lys
TTT
[ENA]
¢þ
>WENV170025865
CCXY01000373
[CCXY] groundwater metagenome; sulfidic groundwater
2949
2874
-
His
GTG
[ENA]
¢þ
>WENV170025862
CCXY01000326
[CCXY] groundwater metagenome; sulfidic groundwater
3059
3142
+
Leu
GAG
[ENA]
¢þ
>WENV170025857
CCXY01000267
[CCXY] groundwater metagenome; sulfidic groundwater
3138
3213
+
Phe
GAA
[ENA]
¢þ
>WENV170025863
CCXY01000326
[CCXY] groundwater metagenome; sulfidic groundwater
3178
3252
+
Pro
GGG
[ENA]
¢þ
>WENV170025837
CCXY01000141
[CCXY] groundwater metagenome; sulfidic groundwater
3196
3270
+
Asn
GTT
[ENA]
¢þ
>WENV170025850
CCXY01000200
[CCXY] groundwater metagenome; sulfidic groundwater
3213
3139
-
Lys
TTT
[ENA]
¢þ
>WENV170025838
CCXY01000141
[CCXY] groundwater metagenome; sulfidic groundwater
3285
3360
+
Met
CAT
[ENA]
¢þ
>WENV170025834
CCXY01000125
[CCXY] groundwater metagenome; sulfidic groundwater
3375
3459
+
Ser
GCT
[ENA]
¢þ
>WENV170025864
CCXY01000326
[CCXY] groundwater metagenome; sulfidic groundwater
3482
3554
+
Thr
TGT
[ENA]
¢þ
>WENV170025858
CCXY01000276
[CCXY] groundwater metagenome; sulfidic groundwater
3817
3742
-
Arg
TCG
[ENA]
¢þ
>WENV170025860
CCXY01000287
[CCXY] groundwater metagenome; sulfidic groundwater
4026
3943
-
Ser
GGA
[ENA]
¢þ
>WENV170025855
CCXY01000233
[CCXY] groundwater metagenome; sulfidic groundwater
4040
4114
+
Glu
TTC
[ENA]
¢þ
>WENV170025848
CCXY01000188
[CCXY] groundwater metagenome; sulfidic groundwater
4136
4221
+
Ser
TGA
[ENA]
¢þ
>WENV170025816
CCXY01000015
[CCXY] groundwater metagenome; sulfidic groundwater
4414
4488
+
Lys
CTT
[ENA]
¢þ
>WENV170025833
CCXY01000117
[CCXY] groundwater metagenome; sulfidic groundwater
4717
4645
-
Pro
CGG
[ENA]
¢þ
>WENV170025861
CCXY01000309
[CCXY] groundwater metagenome; sulfidic groundwater
5039
4954
-
Ser
TGA
[ENA]
¢þ
>WENV170025859
CCXY01000287
[CCXY] groundwater metagenome; sulfidic groundwater
5104
5189
+
Leu
TAA
[ENA]
¢þ
>WENV170025826
CCXY01000074
[CCXY] groundwater metagenome; sulfidic groundwater
5265
5191
-
Ile
GAT
[ENA]
¢þ
>WENV170025830
CCXY01000092
[CCXY] groundwater metagenome; sulfidic groundwater
5398
5328
-
Gln
TTG
[ENA]
¢þ
>WENV170025821
CCXY01000048
[CCXY] groundwater metagenome; sulfidic groundwater
5811
5738
-
Pro
TGG
[ENA]
¢þ
>WENV170025845
CCXY01000180
[CCXY] groundwater metagenome; sulfidic groundwater
5891
5965
+
Asn
GTT
[ENA]
¢þ
>WENV170025846
CCXY01000180
[CCXY] groundwater metagenome; sulfidic groundwater
5980
6055
+
Met
CAT
[ENA]
¢þ
>WENV170025831
CCXY01000097
[CCXY] groundwater metagenome; sulfidic groundwater
6334
6405
+
Thr
CGT
[ENA]
¢þ
>WENV170025818
CCXY01000042
[CCXY] groundwater metagenome; sulfidic groundwater
6496
6422
-
Lys
TTT
[ENA]
¢þ
>WENV170025829
CCXY01000092
[CCXY] groundwater metagenome; sulfidic groundwater
6547
6462
-
Leu
TAG
[ENA]
¢þ
>WENV170025840
CCXY01000144
[CCXY] groundwater metagenome; sulfidic groundwater
6549
6474
-
Arg
GCG
[ENA]
¢þ
>WENV170025849
CCXY01000191
[CCXY] groundwater metagenome; sulfidic groundwater
6664
6749
+
Leu
CAG
[ENA]
¢þ
>WENV170025822
CCXY01000062
[CCXY] groundwater metagenome; sulfidic groundwater
6683
6607
-
Arg
TCT
[ENA]
¢þ
>WENV170025836
CCXY01000138
[CCXY] groundwater metagenome; sulfidic groundwater
6855
6781
-
Glu
TTC
[ENA]
¢þ
>WENV170025847
CCXY01000183
[CCXY] groundwater metagenome; sulfidic groundwater
7269
7343
+
Lys
CTT
[ENA]
¢þ
>WENV170025824
CCXY01000064
[CCXY] groundwater metagenome; sulfidic groundwater
7971
8058
+
Leu
CAA
[ENA]
¢þ
>WENV170025832
CCXY01000116
[CCXY] groundwater metagenome; sulfidic groundwater
10593
10664
+
Ala
CGC
[ENA]
¢þ
>WENV170025854
CCXY01000231
[CCXY] groundwater metagenome; sulfidic groundwater
11769
11845
+
Arg
CCT
[ENA]
¢þ
>WENV170025844
CCXY01000166
[CCXY] groundwater metagenome; sulfidic groundwater
12462
12390
-
Thr
TGT
[ENA]
¢þ
>WENV170025843
CCXY01000166
[CCXY] groundwater metagenome; sulfidic groundwater
12766
12692
-
Pro
GGG
[ENA]
¢þ
>WENV170025842
CCXY01000166
[CCXY] groundwater metagenome; sulfidic groundwater
12885
12802
-
Leu
GAG
[ENA]
¢þ
>WENV170025828
CCXY01000083
[CCXY] groundwater metagenome; sulfidic groundwater
13107
13032
-
Phe
GAA
[ENA]
¢þ
>WENV170025820
CCXY01000045
[CCXY] groundwater metagenome; sulfidic groundwater
14298
14213
-
Leu
TAA
[ENA]
¢þ
>WENV170025827
CCXY01000083
[CCXY] groundwater metagenome; sulfidic groundwater
14514
14444
-
Cys
GCA
[ENA]
¢þ
>WENV170025819
CCXY01000045
[CCXY] groundwater metagenome; sulfidic groundwater
15248
15331
+
Ser
GGA
[ENA]
¢þ
>WENV170025817
CCXY01000042
[CCXY] groundwater metagenome; sulfidic groundwater
23224
23299
+
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK