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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[CEGC] microbial mat metagenome; grass silage
HIT:
114 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170112077
CEGC01017092
[CEGC] microbial mat metagenome; grass silage
1
75
+
Val
GAC
[ENA]
¢þ
>WENV170112044
CEGC01003217
[CEGC] microbial mat metagenome; grass silage
1
75
+
Gly
TCC
[ENA]
¢þ
>WENV170112007
CEGC01000776
[CEGC] microbial mat metagenome; grass silage
1
76
+
Phe
GAA
[ENA]
¢þ
>WENV170112070
CEGC01008731
[CEGC] microbial mat metagenome; grass silage
2
77
+
Gly
GCC
[ENA]
¢þ
>WENV170112076
CEGC01013728
[CEGC] microbial mat metagenome; grass silage
5
80
+
Glu
TTC
[ENA]
¢þ
>WENV170112080
CEGC01021229
[CEGC] microbial mat metagenome; grass silage
9
85
+
Pro
CGG
[ENA]
¢þ
>WENV170112071
CEGC01009358
[CEGC] microbial mat metagenome; grass silage
25
114
+
Ser
TGA
[ENA]
¢þ
>WENV170112029
CEGC01001860
[CEGC] microbial mat metagenome; grass silage
34
120
+
Leu
TAA
[ENA]
¢þ
>WENV170112062
CEGC01005681
[CEGC] microbial mat metagenome; grass silage
47
123
+
Asp
GTC
[ENA]
¢þ
>WENV170112065
CEGC01006344
[CEGC] microbial mat metagenome; grass silage
65
139
+
Arg
CCT
[ENA]
¢þ
>WENV170112055
CEGC01004109
[CEGC] microbial mat metagenome; grass silage
78
151
+
Gly
GCC
[ENA]
¢þ
>WENV170112028
CEGC01001805
[CEGC] microbial mat metagenome; grass silage
79
3
-
Asp
GTC
[ENA]
¢þ
>WENV170112045
CEGC01003217
[CEGC] microbial mat metagenome; grass silage
88
163
+
Thr
GGT
[ENA]
¢þ
>WENV170112046
CEGC01003234
[CEGC] microbial mat metagenome; grass silage
98
9
-
Ser
GGA
[ENA]
¢þ
>WENV170112067
CEGC01006534
[CEGC] microbial mat metagenome; grass silage
100
27
-
Gln
TTG
[ENA]
¢þ
>WENV170112032
CEGC01001948
[CEGC] microbial mat metagenome; grass silage
115
205
+
Ser
TGA
[ENA]
¢þ
>WENV170112031
CEGC01001929
[CEGC] microbial mat metagenome; grass silage
146
70
-
Trp
CCA
[ENA]
¢þ
>WENV170111970
CEGC01000043
[CEGC] microbial mat metagenome; grass silage
149
225
+
Ala
TGC
[ENA]
¢þ
>WENV170112074
CEGC01011690
[CEGC] microbial mat metagenome; grass silage
151
78
-
Gly
TCC
[ENA]
¢þ
>WENV170112072
CEGC01009726
[CEGC] microbial mat metagenome; grass silage
152
66
-
Leu
CAA
[ENA]
¢þ
>WENV170112024
CEGC01001717
[CEGC] microbial mat metagenome; grass silage
153
229
+
Asp
GTC
[ENA]
¢þ
>WENV170112042
CEGC01003083
[CEGC] microbial mat metagenome; grass silage
159
76
-
Leu
TAG
[ENA]
¢þ
>WENV170112063
CEGC01005681
[CEGC] microbial mat metagenome; grass silage
171
247
+
Asp
GTC
[ENA]
¢þ
>WENV170112039
CEGC01002644
[CEGC] microbial mat metagenome; grass silage
187
112
-
Glu
TTC
[ENA]
¢þ
>WENV170112066
CEGC01006360
[CEGC] microbial mat metagenome; grass silage
207
281
+
Lys
TTT
[ENA]
¢þ
>WENV170111982
CEGC01000196
[CEGC] microbial mat metagenome; grass silage
248
334
+
Leu
GAG
[ENA]
¢þ
>WENV170112030
CEGC01001929
[CEGC] microbial mat metagenome; grass silage
257
181
-
Asp
GTC
[ENA]
¢þ
>WENV170111980
CEGC01000163
[CEGC] microbial mat metagenome; grass silage
273
199
-
Gly
GCC
[ENA]
¢þ
>WENV170112038
CEGC01002644
[CEGC] microbial mat metagenome; grass silage
313
238
-
Glu
TTC
[ENA]
¢þ
>WENV170112041
CEGC01002881
[CEGC] microbial mat metagenome; grass silage
362
437
+
Trp
CCA
[ENA]
¢þ
>WENV170111986
CEGC01000281
[CEGC] microbial mat metagenome; grass silage
491
564
+
Gly
CCC
[ENA]
¢þ
>WENV170112025
CEGC01001717
[CEGC] microbial mat metagenome; grass silage
522
598
+
Asp
GTC
[ENA]
¢þ
>WENV170112002
CEGC01000635
[CEGC] microbial mat metagenome; grass silage
533
608
+
Trp
CCA
[ENA]
¢þ
>WENV170112068
CEGC01006714
[CEGC] microbial mat metagenome; grass silage
555
473
-
Leu
CAA
[ENA]
¢þ
>WENV170112051
CEGC01003416
[CEGC] microbial mat metagenome; grass silage
601
528
-
Gln
TTG
[ENA]
¢þ
>WENV170112061
CEGC01005671
[CEGC] microbial mat metagenome; grass silage
628
552
-
Arg
CCG
[ENA]
¢þ
>WENV170112011
CEGC01000933
[CEGC] microbial mat metagenome; grass silage
633
709
+
Ile
GAT
[ENA]
¢þ
>WENV170112079
CEGC01020923
[CEGC] microbial mat metagenome; grass silage
712
785
+
Gln
TTG
[ENA]
¢þ
>WENV170112012
CEGC01000933
[CEGC] microbial mat metagenome; grass silage
748
823
+
Ala
TGC
[ENA]
¢þ
>WENV170112069
CEGC01008185
[CEGC] microbial mat metagenome; grass silage
948
872
-
Val
GAC
[ENA]
¢þ
>WENV170112078
CEGC01018887
[CEGC] microbial mat metagenome; grass silage
1011
939
-
Thr
CGT
[ENA]
¢þ
>WENV170112006
CEGC01000729
[CEGC] microbial mat metagenome; grass silage
1174
1100
-
Thr
GGT
[ENA]
¢þ
>WENV170112005
CEGC01000729
[CEGC] microbial mat metagenome; grass silage
1268
1194
-
Gly
TCC
[ENA]
¢þ
>WENV170112064
CEGC01006126
[CEGC] microbial mat metagenome; grass silage
1277
1202
-
Trp
CCA
[ENA]
¢þ
>WENV170112021
CEGC01001593
[CEGC] microbial mat metagenome; grass silage
1283
1198
-
Leu
TAA
[ENA]
¢þ
>WENV170112004
CEGC01000729
[CEGC] microbial mat metagenome; grass silage
1363
1280
-
Tyr
GTA
[ENA]
¢þ
>WENV170112003
CEGC01000729
[CEGC] microbial mat metagenome; grass silage
1463
1388
-
Thr
TGT
[ENA]
¢þ
>WENV170112073
CEGC01010425
[CEGC] microbial mat metagenome; grass silage
1475
1549
+
Glu
TTC
[ENA]
¢þ
>WENV170112054
CEGC01003967
[CEGC] microbial mat metagenome; grass silage
1561
1485
-
Pro
GGG
[ENA]
¢þ
>WENV170112053
CEGC01003546
[CEGC] microbial mat metagenome; grass silage
1590
1515
-
Val
TAC
[ENA]
¢þ
>WENV170111971
CEGC01000044
[CEGC] microbial mat metagenome; grass silage
1616
1692
+
Ile
GAT
[ENA]
¢þ
>WENV170112033
CEGC01001980
[CEGC] microbial mat metagenome; grass silage
1701
1626
-
Lys
TTT
[ENA]
¢þ
>WENV170111972
CEGC01000044
[CEGC] microbial mat metagenome; grass silage
1803
1879
+
Ala
TGC
[ENA]
¢þ
>WENV170112010
CEGC01000925
[CEGC] microbial mat metagenome; grass silage
1843
1756
-
Ser
GGA
[ENA]
¢þ
>WENV170111983
CEGC01000229
[CEGC] microbial mat metagenome; grass silage
1889
1965
+
Ile
GAT
[ENA]
¢þ
>WENV170111984
CEGC01000229
[CEGC] microbial mat metagenome; grass silage
2070
2144
+
Ala
TGC
[ENA]
¢þ
>WENV170112027
CEGC01001771
[CEGC] microbial mat metagenome; grass silage
2328
2402
+
Val
CAC
[ENA]
¢þ
>WENV170112047
CEGC01003338
[CEGC] microbial mat metagenome; grass silage
2345
2431
+
Leu
CAG
[ENA]
¢þ
>WENV170112037
CEGC01002547
[CEGC] microbial mat metagenome; grass silage
2346
2433
+
Leu
TAA
[ENA]
¢þ
>WENV170112052
CEGC01003543
[CEGC] microbial mat metagenome; grass silage
2397
2483
+
Leu
CAG
[ENA]
¢þ
>WENV170112048
CEGC01003338
[CEGC] microbial mat metagenome; grass silage
2507
2593
+
Leu
CAG
[ENA]
¢þ
>WENV170112075
CEGC01012751
[CEGC] microbial mat metagenome; grass silage
2569
2493
-
Met
CAT
[ENA]
¢þ
>WENV170112000
CEGC01000572
[CEGC] microbial mat metagenome; grass silage
2658
2582
-
Met
CAT
[ENA]
¢þ
>WENV170112020
CEGC01001339
[CEGC] microbial mat metagenome; grass silage
2659
2584
-
Lys
CTT
[ENA]
¢þ
>WENV170112035
CEGC01002032
[CEGC] microbial mat metagenome; grass silage
2707
2631
-
Asn
GTT
[ENA]
¢þ
>WENV170112056
CEGC01004311
[CEGC] microbial mat metagenome; grass silage
3034
2945
-
Ser
GGA
[ENA]
¢þ
>WENV170111999
CEGC01000567
[CEGC] microbial mat metagenome; grass silage
3051
3127
+
Arg
TCT
[ENA]
¢þ
>WENV170112049
CEGC01003374
[CEGC] microbial mat metagenome; grass silage
3234
3309
+
Glu
TTC
[ENA]
¢þ
>WENV170112060
CEGC01005250
[CEGC] microbial mat metagenome; grass silage
3242
3167
-
His
GTG
[ENA]
¢þ
>WENV170111979
CEGC01000153
[CEGC] microbial mat metagenome; grass silage
3253
3179
-
Val
GAC
[ENA]
¢þ
>WENV170111988
CEGC01000373
[CEGC] microbial mat metagenome; grass silage
3279
3204
-
Ala
TGC
[ENA]
¢þ
>WENV170112050
CEGC01003374
[CEGC] microbial mat metagenome; grass silage
3317
3392
+
Gly
GCC
[ENA]
¢þ
>WENV170112059
CEGC01005250
[CEGC] microbial mat metagenome; grass silage
3347
3263
-
Leu
TAG
[ENA]
¢þ
>WENV170111998
CEGC01000472
[CEGC] microbial mat metagenome; grass silage
3384
3308
-
Arg
TCT
[ENA]
¢þ
>WENV170111987
CEGC01000373
[CEGC] microbial mat metagenome; grass silage
3418
3342
-
Ile
GAT
[ENA]
¢þ
>WENV170112058
CEGC01005250
[CEGC] microbial mat metagenome; grass silage
3459
3384
-
His
GTG
[ENA]
¢þ
>WENV170112034
CEGC01001989
[CEGC] microbial mat metagenome; grass silage
3555
3482
-
Gln
CTG
[ENA]
¢þ
>WENV170111990
CEGC01000380
[CEGC] microbial mat metagenome; grass silage
3575
3500
-
Ala
TGC
[ENA]
¢þ
>WENV170112057
CEGC01005250
[CEGC] microbial mat metagenome; grass silage
3582
3506
-
Arg
TCT
[ENA]
¢þ
>WENV170111989
CEGC01000380
[CEGC] microbial mat metagenome; grass silage
3690
3614
-
Ile
GAT
[ENA]
¢þ
>WENV170111974
CEGC01000062
[CEGC] microbial mat metagenome; grass silage
3728
3652
-
Met
CAT
[ENA]
¢þ
>WENV170112026
CEGC01001760
[CEGC] microbial mat metagenome; grass silage
3752
3677
-
Lys
TTT
[ENA]
¢þ
>WENV170111991
CEGC01000409
[CEGC] microbial mat metagenome; grass silage
3817
3742
-
Thr
CGT
[ENA]
¢þ
>WENV170111997
CEGC01000472
[CEGC] microbial mat metagenome; grass silage
3987
3911
-
Pro
TGG
[ENA]
¢þ
>WENV170111994
CEGC01000434
[CEGC] microbial mat metagenome; grass silage
4165
4254
+
Ser
TGA
[ENA]
¢þ
>WENV170112014
CEGC01000960
[CEGC] microbial mat metagenome; grass silage
4396
4471
+
Ala
CGC
[ENA]
¢þ
>WENV170112023
CEGC01001669
[CEGC] microbial mat metagenome; grass silage
4423
4332
-
Ser
GCT
[ENA]
¢þ
>WENV170111976
CEGC01000104
[CEGC] microbial mat metagenome; grass silage
4509
4584
+
Asn
GTT
[ENA]
¢þ
>WENV170111981
CEGC01000184
[CEGC] microbial mat metagenome; grass silage
4603
4689
+
Leu
CAG
[ENA]
¢þ
>WENV170111977
CEGC01000104
[CEGC] microbial mat metagenome; grass silage
4609
4684
+
Asn
GTT
[ENA]
¢þ
>WENV170112019
CEGC01001269
[CEGC] microbial mat metagenome; grass silage
4614
4540
-
Asn
GTT
[ENA]
¢þ
>WENV170111978
CEGC01000104
[CEGC] microbial mat metagenome; grass silage
4692
4768
+
Pro
TGG
[ENA]
¢þ
>WENV170111985
CEGC01000271
[CEGC] microbial mat metagenome; grass silage
4703
4777
+
Thr
GGT
[ENA]
¢þ
>WENV170112013
CEGC01000955
[CEGC] microbial mat metagenome; grass silage
4732
4821
+
Ser
CGA
[ENA]
¢þ
>WENV170112018
CEGC01001269
[CEGC] microbial mat metagenome; grass silage
4766
4692
-
Asn
GTT
[ENA]
¢þ
>WENV170112043
CEGC01003125
[CEGC] microbial mat metagenome; grass silage
4776
4850
+
Gln
TTG
[ENA]
¢þ
>WENV170112017
CEGC01001269
[CEGC] microbial mat metagenome; grass silage
4895
4822
-
Cys
GCA
[ENA]
¢þ
>WENV170111993
CEGC01000423
[CEGC] microbial mat metagenome; grass silage
5214
5139
-
Ala
GGC
[ENA]
¢þ
>WENV170111992
CEGC01000423
[CEGC] microbial mat metagenome; grass silage
5351
5276
-
Ala
GGC
[ENA]
¢þ
>WENV170111995
CEGC01000442
[CEGC] microbial mat metagenome; grass silage
5872
5948
+
Pro
GGG
[ENA]
¢þ
>WENV170111975
CEGC01000068
[CEGC] microbial mat metagenome; grass silage
6031
5955
-
Arg
ACG
[ENA]
¢þ
>WENV170112040
CEGC01002692
[CEGC] microbial mat metagenome; grass silage
6325
6252
-
Gly
CCC
[ENA]
¢þ
>WENV170111969
CEGC01000032
[CEGC] microbial mat metagenome; grass silage
6426
6350
-
Arg
CCT
[ENA]
¢þ
>WENV170111973
CEGC01000046
[CEGC] microbial mat metagenome; grass silage
6702
6776
+
Met
CAT
[ENA]
¢þ
>WENV170112001
CEGC01000600
[CEGC] microbial mat metagenome; grass silage
6776
6700
-
Arg
CCG
[ENA]
¢þ
>WENV170112016
CEGC01001201
[CEGC] microbial mat metagenome; grass silage
7116
7032
-
Leu
TAG
[ENA]
¢þ
>WENV170111996
CEGC01000472
[CEGC] microbial mat metagenome; grass silage
7551
7627
+
Pro
CGG
[ENA]
¢þ
>WENV170112009
CEGC01000854
[CEGC] microbial mat metagenome; grass silage
7766
7841
+
Phe
GAA
[ENA]
¢þ
>WENV170112008
CEGC01000833
[CEGC] microbial mat metagenome; grass silage
8656
8743
+
Ser
GCT
[ENA]
¢þ
>WENV170112015
CEGC01001056
[CEGC] microbial mat metagenome; grass silage
11240
11164
-
Arg
ACG
[ENA]
¢þ
>WENV170112022
CEGC01001605
[CEGC] microbial mat metagenome; grass silage
12497
12573
+
His
GTG
[ENA]
¢þ
>WENV170111968
CEGC01000029
[CEGC] microbial mat metagenome; grass silage
14630
14546
-
Leu
CAA
[ENA]
¢þ
>WENV170112036
CEGC01002091
[CEGC] microbial mat metagenome; grass silage
17272
17347
+
Lys
TTT
[ENA]
¢þ
>WENV170111967
CEGC01000011
[CEGC] microbial mat metagenome; grass silage
22555
22631
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK