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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[CEGD] microbial mat metagenome; grass silage
HIT:
133 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170112118
CEGD01000843
[CEGD] microbial mat metagenome; grass silage
1
87
+
Leu
CAG
[ENA]
¢þ
>WENV170112183
CEGD01007928
[CEGD] microbial mat metagenome; grass silage
21
97
+
Thr
TGT
[ENA]
¢þ
>WENV170112173
CEGD01006669
[CEGD] microbial mat metagenome; grass silage
22
96
+
Thr
GGT
[ENA]
¢þ
>WENV170112159
CEGD01005400
[CEGD] microbial mat metagenome; grass silage
28
101
+
Cys
GCA
[ENA]
¢þ
>WENV170112148
CEGD01003796
[CEGD] microbial mat metagenome; grass silage
41
123
+
Tyr
GTA
[ENA]
¢þ
>WENV170112204
CEGD01014072
[CEGD] microbial mat metagenome; grass silage
43
119
+
Asp
GTC
[ENA]
¢þ
>WENV170112161
CEGD01005532
[CEGD] microbial mat metagenome; grass silage
46
129
+
Leu
CAA
[ENA]
¢þ
>WENV170112174
CEGD01006676
[CEGD] microbial mat metagenome; grass silage
69
144
+
Lys
TTT
[ENA]
¢þ
>WENV170112154
CEGD01004229
[CEGD] microbial mat metagenome; grass silage
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV170112138
CEGD01002519
[CEGD] microbial mat metagenome; grass silage
101
25
-
Asp
GTC
[ENA]
¢þ
>WENV170112196
CEGD01010764
[CEGD] microbial mat metagenome; grass silage
101
25
-
Ile
GAT
[ENA]
¢þ
>WENV170112179
CEGD01007304
[CEGD] microbial mat metagenome; grass silage
111
36
-
Asn
GTT
[ENA]
¢þ
>WENV170112167
CEGD01005691
[CEGD] microbial mat metagenome; grass silage
119
30
-
Ser
GGA
[ENA]
¢þ
>WENV170112175
CEGD01006908
[CEGD] microbial mat metagenome; grass silage
119
209
+
Ser
TGA
[ENA]
¢þ
>WENV170112147
CEGD01003687
[CEGD] microbial mat metagenome; grass silage
120
45
-
Asn
GTT
[ENA]
¢þ
>WENV170112124
CEGD01001141
[CEGD] microbial mat metagenome; grass silage
122
198
+
Ala
TGC
[ENA]
¢þ
>WENV170112203
CEGD01013354
[CEGD] microbial mat metagenome; grass silage
126
50
-
Arg
CCG
[ENA]
¢þ
>WENV170112119
CEGD01000894
[CEGD] microbial mat metagenome; grass silage
126
51
-
Val
TAC
[ENA]
¢þ
>WENV170112184
CEGD01007928
[CEGD] microbial mat metagenome; grass silage
132
206
+
Thr
GGT
[ENA]
¢þ
>WENV170112136
CEGD01002173
[CEGD] microbial mat metagenome; grass silage
137
63
-
Gly
GCC
[ENA]
¢þ
>WENV170112198
CEGD01011521
[CEGD] microbial mat metagenome; grass silage
140
214
+
Arg
CCT
[ENA]
¢þ
>WENV170112123
CEGD01001140
[CEGD] microbial mat metagenome; grass silage
141
217
+
Ala
TGC
[ENA]
¢þ
>WENV170112168
CEGD01005842
[CEGD] microbial mat metagenome; grass silage
148
63
-
Leu
GAG
[ENA]
¢þ
>WENV170112210
CEGD01022412
[CEGD] microbial mat metagenome; grass silage
156
229
+
Gly
TCC
[ENA]
¢þ
>WENV170112197
CEGD01010846
[CEGD] microbial mat metagenome; grass silage
167
86
-
Tyr
GTA
[ENA]
¢þ
>WENV170112206
CEGD01017124
[CEGD] microbial mat metagenome; grass silage
170
97
-
Gly
TCC
[ENA]
¢þ
>WENV170112209
CEGD01021579
[CEGD] microbial mat metagenome; grass silage
173
97
-
Pro
CGG
[ENA]
¢þ
>WENV170112126
CEGD01001211
[CEGD] microbial mat metagenome; grass silage
197
121
-
Ile
GAT
[ENA]
¢þ
>WENV170112166
CEGD01005565
[CEGD] microbial mat metagenome; grass silage
205
130
-
Thr
GGT
[ENA]
¢þ
>WENV170112146
CEGD01003687
[CEGD] microbial mat metagenome; grass silage
220
145
-
Asn
GTT
[ENA]
¢þ
>WENV170112180
CEGD01007360
[CEGD] microbial mat metagenome; grass silage
223
294
+
Gln
TTG
[ENA]
¢þ
>WENV170112194
CEGD01010297
[CEGD] microbial mat metagenome; grass silage
235
311
+
Asp
GTC
[ENA]
¢þ
>WENV170112201
CEGD01013095
[CEGD] microbial mat metagenome; grass silage
237
153
-
Leu
TAG
[ENA]
¢þ
>WENV170112149
CEGD01003796
[CEGD] microbial mat metagenome; grass silage
245
332
+
Ser
TGA
[ENA]
¢þ
>WENV170112178
CEGD01007304
[CEGD] microbial mat metagenome; grass silage
280
205
-
Asn
GTT
[ENA]
¢þ
>WENV170112205
CEGD01017124
[CEGD] microbial mat metagenome; grass silage
287
203
-
Tyr
GTA
[ENA]
¢þ
>WENV170112165
CEGD01005565
[CEGD] microbial mat metagenome; grass silage
292
218
-
Gly
TCC
[ENA]
¢þ
>WENV170112134
CEGD01001725
[CEGD] microbial mat metagenome; grass silage
311
235
-
Arg
CCG
[ENA]
¢þ
>WENV170112170
CEGD01006355
[CEGD] microbial mat metagenome; grass silage
345
269
-
Arg
CCG
[ENA]
¢þ
>WENV170112135
CEGD01002173
[CEGD] microbial mat metagenome; grass silage
386
312
-
Gly
GCC
[ENA]
¢þ
>WENV170112164
CEGD01005565
[CEGD] microbial mat metagenome; grass silage
410
326
-
Tyr
GTA
[ENA]
¢þ
>WENV170112212
CEGD01023890
[CEGD] microbial mat metagenome; grass silage
458
383
-
Gly
GCC
[ENA]
¢þ
>WENV170112163
CEGD01005565
[CEGD] microbial mat metagenome; grass silage
535
460
-
Thr
TGT
[ENA]
¢þ
>WENV170112169
CEGD01006184
[CEGD] microbial mat metagenome; grass silage
579
655
+
Met
CAT
[ENA]
¢þ
>WENV170112155
CEGD01004249
[CEGD] microbial mat metagenome; grass silage
580
493
-
Leu
TAA
[ENA]
¢þ
>WENV170112200
CEGD01012253
[CEGD] microbial mat metagenome; grass silage
581
505
-
Met
CAT
[ENA]
¢þ
>WENV170112208
CEGD01018586
[CEGD] microbial mat metagenome; grass silage
607
683
+
Asp
GTC
[ENA]
¢þ
>WENV170112110
CEGD01000626
[CEGD] microbial mat metagenome; grass silage
612
539
-
Gln
CTG
[ENA]
¢þ
>WENV170112202
CEGD01013151
[CEGD] microbial mat metagenome; grass silage
621
545
-
Met
CAT
[ENA]
¢þ
>WENV170112106
CEGD01000483
[CEGD] microbial mat metagenome; grass silage
650
575
-
Lys
CTT
[ENA]
¢þ
>WENV170112162
CEGD01005537
[CEGD] microbial mat metagenome; grass silage
658
732
+
Gln
TTG
[ENA]
¢þ
>WENV170112213
CEGD01024851
[CEGD] microbial mat metagenome; grass silage
700
625
-
Arg
CCT
[ENA]
¢þ
>WENV170112199
CEGD01011929
[CEGD] microbial mat metagenome; grass silage
720
795
+
Lys
TTT
[ENA]
¢þ
>WENV170112193
CEGD01010225
[CEGD] microbial mat metagenome; grass silage
786
862
+
Met
CAT
[ENA]
¢þ
>WENV170112211
CEGD01022905
[CEGD] microbial mat metagenome; grass silage
969
1045
+
Arg
TCT
[ENA]
¢þ
>WENV170112132
CEGD01001690
[CEGD] microbial mat metagenome; grass silage
1025
1101
+
Arg
ACG
[ENA]
¢þ
>WENV170112081
CEGD01000001
[CEGD] microbial mat metagenome; grass silage
1030
1106
+
Ile
GAT
[ENA]
¢þ
>WENV170112122
CEGD01001080
[CEGD] microbial mat metagenome; grass silage
1062
1148
+
Leu
GAG
[ENA]
¢þ
>WENV170112207
CEGD01017931
[CEGD] microbial mat metagenome; grass silage
1073
1147
+
Arg
TCT
[ENA]
¢þ
>WENV170112186
CEGD01008733
[CEGD] microbial mat metagenome; grass silage
1081
1167
+
Leu
TAA
[ENA]
¢þ
>WENV170112187
CEGD01008733
[CEGD] microbial mat metagenome; grass silage
1183
1256
+
Cys
GCA
[ENA]
¢þ
>WENV170112082
CEGD01000001
[CEGD] microbial mat metagenome; grass silage
1224
1299
+
Ala
TGC
[ENA]
¢þ
>WENV170112158
CEGD01004910
[CEGD] microbial mat metagenome; grass silage
1254
1344
+
Ser
TGA
[ENA]
¢þ
>WENV170112128
CEGD01001289
[CEGD] microbial mat metagenome; grass silage
1259
1182
-
Arg
TCT
[ENA]
¢þ
>WENV170112188
CEGD01008733
[CEGD] microbial mat metagenome; grass silage
1259
1334
+
Gly
GCC
[ENA]
¢þ
>WENV170112143
CEGD01003137
[CEGD] microbial mat metagenome; grass silage
1301
1375
+
Glu
TTC
[ENA]
¢þ
>WENV170112139
CEGD01002731
[CEGD] microbial mat metagenome; grass silage
1308
1222
-
Leu
CAG
[ENA]
¢þ
>WENV170112127
CEGD01001289
[CEGD] microbial mat metagenome; grass silage
1372
1297
-
Arg
TCT
[ENA]
¢þ
>WENV170112189
CEGD01008733
[CEGD] microbial mat metagenome; grass silage
1398
1484
+
Leu
TAA
[ENA]
¢þ
>WENV170112125
CEGD01001174
[CEGD] microbial mat metagenome; grass silage
1399
1324
-
Ala
TGC
[ENA]
¢þ
>WENV170112171
CEGD01006467
[CEGD] microbial mat metagenome; grass silage
1471
1547
+
Pro
CGG
[ENA]
¢þ
>WENV170112190
CEGD01008733
[CEGD] microbial mat metagenome; grass silage
1493
1568
+
Gly
GCC
[ENA]
¢þ
>WENV170112177
CEGD01006930
[CEGD] microbial mat metagenome; grass silage
1495
1420
-
Lys
TTT
[ENA]
¢þ
>WENV170112172
CEGD01006467
[CEGD] microbial mat metagenome; grass silage
1571
1647
+
Pro
CGG
[ENA]
¢þ
>WENV170112176
CEGD01006930
[CEGD] microbial mat metagenome; grass silage
1586
1511
-
Lys
TTT
[ENA]
¢þ
>WENV170112129
CEGD01001295
[CEGD] microbial mat metagenome; grass silage
1608
1535
-
Cys
GCA
[ENA]
¢þ
>WENV170112083
CEGD01000006
[CEGD] microbial mat metagenome; grass silage
1616
1692
+
Ile
GAT
[ENA]
¢þ
>WENV170112157
CEGD01004322
[CEGD] microbial mat metagenome; grass silage
1655
1582
-
Gly
GCC
[ENA]
¢þ
>WENV170112100
CEGD01000421
[CEGD] microbial mat metagenome; grass silage
1703
1779
+
Pro
TGG
[ENA]
¢þ
>WENV170112094
CEGD01000263
[CEGD] microbial mat metagenome; grass silage
1743
1667
-
Arg
ACG
[ENA]
¢þ
>WENV170112160
CEGD01005400
[CEGD] microbial mat metagenome; grass silage
1745
1660
-
Leu
TAA
[ENA]
¢þ
>WENV170112156
CEGD01004322
[CEGD] microbial mat metagenome; grass silage
1787
1712
-
Gly
GCC
[ENA]
¢þ
>WENV170112084
CEGD01000006
[CEGD] microbial mat metagenome; grass silage
1803
1879
+
Ala
TGC
[ENA]
¢þ
>WENV170112086
CEGD01000029
[CEGD] microbial mat metagenome; grass silage
1804
1878
+
Thr
GGT
[ENA]
¢þ
>WENV170112151
CEGD01003870
[CEGD] microbial mat metagenome; grass silage
1869
1793
-
Pro
CGG
[ENA]
¢þ
>WENV170112195
CEGD01010354
[CEGD] microbial mat metagenome; grass silage
1885
1958
+
Cys
GCA
[ENA]
¢þ
>WENV170112140
CEGD01002815
[CEGD] microbial mat metagenome; grass silage
1886
1960
+
Lys
TTT
[ENA]
¢þ
>WENV170112120
CEGD01000951
[CEGD] microbial mat metagenome; grass silage
1929
2011
+
Leu
GAG
[ENA]
¢þ
>WENV170112111
CEGD01000656
[CEGD] microbial mat metagenome; grass silage
1955
2031
+
Ile
GAT
[ENA]
¢þ
>WENV170112103
CEGD01000482
[CEGD] microbial mat metagenome; grass silage
2147
2223
+
Asp
GTC
[ENA]
¢þ
>WENV170112142
CEGD01003121
[CEGD] microbial mat metagenome; grass silage
2276
2365
+
Ser
TGA
[ENA]
¢þ
>WENV170112101
CEGD01000421
[CEGD] microbial mat metagenome; grass silage
2306
2382
+
Arg
TCT
[ENA]
¢þ
>WENV170112191
CEGD01008754
[CEGD] microbial mat metagenome; grass silage
2375
2286
-
Ser
CGA
[ENA]
¢þ
>WENV170112104
CEGD01000482
[CEGD] microbial mat metagenome; grass silage
2383
2459
+
Asp
GTC
[ENA]
¢þ
>WENV170112105
CEGD01000482
[CEGD] microbial mat metagenome; grass silage
2751
2827
+
Asp
GTC
[ENA]
¢þ
>WENV170112099
CEGD01000416
[CEGD] microbial mat metagenome; grass silage
2866
2939
+
Gly
CCC
[ENA]
¢þ
>WENV170112095
CEGD01000362
[CEGD] microbial mat metagenome; grass silage
2916
2841
-
Glu
TTC
[ENA]
¢þ
>WENV170112109
CEGD01000583
[CEGD] microbial mat metagenome; grass silage
2964
3040
+
Met
CAT
[ENA]
¢þ
>WENV170112185
CEGD01008163
[CEGD] microbial mat metagenome; grass silage
2982
3063
+
Tyr
GTA
[ENA]
¢þ
>WENV170112121
CEGD01000962
[CEGD] microbial mat metagenome; grass silage
3024
3100
+
Met
CAT
[ENA]
¢þ
>WENV170112181
CEGD01007880
[CEGD] microbial mat metagenome; grass silage
3239
3314
+
Glu
TTC
[ENA]
¢þ
>WENV170112107
CEGD01000515
[CEGD] microbial mat metagenome; grass silage
3306
3232
-
Gln
CTG
[ENA]
¢þ
>WENV170112182
CEGD01007880
[CEGD] microbial mat metagenome; grass silage
3337
3412
+
Gly
GCC
[ENA]
¢þ
>WENV170112150
CEGD01003833
[CEGD] microbial mat metagenome; grass silage
3500
3578
+
Pro
GGG
[ENA]
¢þ
>WENV170112145
CEGD01003524
[CEGD] microbial mat metagenome; grass silage
3692
3768
+
Arg
CCG
[ENA]
¢þ
>WENV170112192
CEGD01009507
[CEGD] microbial mat metagenome; grass silage
3697
3771
+
Val
CAC
[ENA]
¢þ
>WENV170112108
CEGD01000559
[CEGD] microbial mat metagenome; grass silage
3719
3645
-
Ala
TGC
[ENA]
¢þ
>WENV170112088
CEGD01000058
[CEGD] microbial mat metagenome; grass silage
3751
3835
+
Leu
GAG
[ENA]
¢þ
>WENV170112133
CEGD01001712
[CEGD] microbial mat metagenome; grass silage
3954
3864
-
Ser
GGA
[ENA]
¢þ
>WENV170112152
CEGD01003936
[CEGD] microbial mat metagenome; grass silage
4507
4416
-
Ser
GCT
[ENA]
¢þ
>WENV170112087
CEGD01000030
[CEGD] microbial mat metagenome; grass silage
4747
4836
+
Ser
CGA
[ENA]
¢þ
>WENV170112137
CEGD01002470
[CEGD] microbial mat metagenome; grass silage
4884
4970
+
Leu
CAG
[ENA]
¢þ
>WENV170112131
CEGD01001567
[CEGD] microbial mat metagenome; grass silage
4896
4971
+
Ala
TGC
[ENA]
¢þ
>WENV170112153
CEGD01004019
[CEGD] microbial mat metagenome; grass silage
5272
5196
-
Arg
ACG
[ENA]
¢þ
>WENV170112130
CEGD01001487
[CEGD] microbial mat metagenome; grass silage
5286
5211
-
Thr
CGT
[ENA]
¢þ
>WENV170112089
CEGD01000091
[CEGD] microbial mat metagenome; grass silage
5515
5440
-
Lys
TTT
[ENA]
¢þ
>WENV170112085
CEGD01000023
[CEGD] microbial mat metagenome; grass silage
5703
5630
-
Gln
TTG
[ENA]
¢þ
>WENV170112141
CEGD01003000
[CEGD] microbial mat metagenome; grass silage
5919
5845
-
Met
CAT
[ENA]
¢þ
>WENV170112115
CEGD01000770
[CEGD] microbial mat metagenome; grass silage
6203
6127
-
Pro
GGG
[ENA]
¢þ
>WENV170112114
CEGD01000677
[CEGD] microbial mat metagenome; grass silage
6700
6626
-
Asn
GTT
[ENA]
¢þ
>WENV170112113
CEGD01000677
[CEGD] microbial mat metagenome; grass silage
6852
6778
-
Asn
GTT
[ENA]
¢þ
>WENV170112112
CEGD01000677
[CEGD] microbial mat metagenome; grass silage
6981
6908
-
Cys
GCA
[ENA]
¢þ
>WENV170112102
CEGD01000457
[CEGD] microbial mat metagenome; grass silage
7225
7141
-
Leu
TAG
[ENA]
¢þ
>WENV170112091
CEGD01000186
[CEGD] microbial mat metagenome; grass silage
7473
7548
+
Lys
TTT
[ENA]
¢þ
>WENV170112092
CEGD01000186
[CEGD] microbial mat metagenome; grass silage
7586
7661
+
Lys
TTT
[ENA]
¢þ
>WENV170112144
CEGD01003502
[CEGD] microbial mat metagenome; grass silage
8289
8363
+
Val
CAC
[ENA]
¢þ
>WENV170112116
CEGD01000788
[CEGD] microbial mat metagenome; grass silage
10563
10638
+
Ala
GGC
[ENA]
¢þ
>WENV170112117
CEGD01000788
[CEGD] microbial mat metagenome; grass silage
10700
10775
+
Ala
GGC
[ENA]
¢þ
>WENV170112096
CEGD01000369
[CEGD] microbial mat metagenome; grass silage
11487
11563
+
Arg
CCT
[ENA]
¢þ
>WENV170112090
CEGD01000125
[CEGD] microbial mat metagenome; grass silage
13108
13032
-
His
GTG
[ENA]
¢þ
>WENV170112098
CEGD01000412
[CEGD] microbial mat metagenome; grass silage
15276
15202
-
Val
GAC
[ENA]
¢þ
>WENV170112093
CEGD01000229
[CEGD] microbial mat metagenome; grass silage
22243
22332
+
Ser
GGA
[ENA]
¢þ
>WENV170112097
CEGD01000386
[CEGD] microbial mat metagenome; grass silage
23236
23312
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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