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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWGO] human gut metagenome; ENVO:feces
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170539795
CWGO01000021
[CWGO] human gut metagenome; ENVO:feces
77
153
+
Asp
GTC
[ENA]
¢þ
>WENV170539819
CWGO01000062
[CWGO] human gut metagenome; ENVO:feces
109
34
-
Val
TAC
[ENA]
¢þ
>WENV170539805
CWGO01000037
[CWGO] human gut metagenome; ENVO:feces
120
46
-
Gly
TCC
[ENA]
¢þ
>WENV170539812
CWGO01000049
[CWGO] human gut metagenome; ENVO:feces
133
57
-
Arg
ACG
[ENA]
¢þ
>WENV170539796
CWGO01000021
[CWGO] human gut metagenome; ENVO:feces
162
237
+
Trp
CCA
[ENA]
¢þ
>WENV170539840
CWGO01000076
[CWGO] human gut metagenome; ENVO:feces
212
137
-
Lys
TTT
[ENA]
¢þ
>WENV170539811
CWGO01000049
[CWGO] human gut metagenome; ENVO:feces
229
137
-
Ser
GCT
[ENA]
¢þ
>WENV170539818
CWGO01000062
[CWGO] human gut metagenome; ENVO:feces
230
155
-
Val
TAC
[ENA]
¢þ
>WENV170539804
CWGO01000037
[CWGO] human gut metagenome; ENVO:feces
321
237
-
Tyr
GTA
[ENA]
¢þ
>WENV170539817
CWGO01000062
[CWGO] human gut metagenome; ENVO:feces
347
272
-
Val
TAC
[ENA]
¢þ
>WENV170539803
CWGO01000037
[CWGO] human gut metagenome; ENVO:feces
405
330
-
Thr
TGT
[ENA]
¢þ
>WENV170539848
CWGO01000081
[CWGO] human gut metagenome; ENVO:feces
1750
1825
+
Asn
GTT
[ENA]
¢þ
>WENV170539814
CWGO01000062
[CWGO] human gut metagenome; ENVO:feces
3053
3128
+
Ala
GGC
[ENA]
¢þ
>WENV170539815
CWGO01000062
[CWGO] human gut metagenome; ENVO:feces
3171
3246
+
Ala
GGC
[ENA]
¢þ
>WENV170539841
CWGO01000078
[CWGO] human gut metagenome; ENVO:feces
5860
5936
+
Arg
CCT
[ENA]
¢þ
>WENV170539839
CWGO01000075
[CWGO] human gut metagenome; ENVO:feces
11085
11010
-
Lys
TTT
[ENA]
¢þ
>WENV170539838
CWGO01000075
[CWGO] human gut metagenome; ENVO:feces
11291
11216
-
Lys
TTT
[ENA]
¢þ
>WENV170539851
CWGO01000081
[CWGO] human gut metagenome; ENVO:feces
11768
11693
-
Asn
GTT
[ENA]
¢þ
>WENV170539806
CWGO01000042
[CWGO] human gut metagenome; ENVO:feces
12079
12166
+
Ser
GGA
[ENA]
¢þ
>WENV170539837
CWGO01000074
[CWGO] human gut metagenome; ENVO:feces
13006
12930
-
Asp
GTC
[ENA]
¢þ
>WENV170539842
CWGO01000078
[CWGO] human gut metagenome; ENVO:feces
18299
18375
+
Arg
TCT
[ENA]
¢þ
>WENV170539836
CWGO01000074
[CWGO] human gut metagenome; ENVO:feces
22445
22369
-
Asp
GTC
[ENA]
¢þ
>WENV170539816
CWGO01000062
[CWGO] human gut metagenome; ENVO:feces
26359
26285
-
Arg
CCT
[ENA]
¢þ
>WENV170539797
CWGO01000021
[CWGO] human gut metagenome; ENVO:feces
36386
36462
+
Arg
CCG
[ENA]
¢þ
>WENV170539798
CWGO01000021
[CWGO] human gut metagenome; ENVO:feces
36517
36592
+
His
GTG
[ENA]
¢þ
>WENV170539799
CWGO01000021
[CWGO] human gut metagenome; ENVO:feces
36613
36699
+
Leu
CAG
[ENA]
¢þ
>WENV170539800
CWGO01000021
[CWGO] human gut metagenome; ENVO:feces
36742
36818
+
Pro
TGG
[ENA]
¢þ
>WENV170539844
CWGO01000079
[CWGO] human gut metagenome; ENVO:feces
42488
42412
-
Val
GAC
[ENA]
¢þ
>WENV170539843
CWGO01000079
[CWGO] human gut metagenome; ENVO:feces
42575
42499
-
Val
GAC
[ENA]
¢þ
>WENV170539850
CWGO01000081
[CWGO] human gut metagenome; ENVO:feces
51343
51268
-
Asn
GTT
[ENA]
¢þ
>WENV170539830
CWGO01000072
[CWGO] human gut metagenome; ENVO:feces
52086
52160
+
Gln
TTG
[ENA]
¢þ
>WENV170539831
CWGO01000072
[CWGO] human gut metagenome; ENVO:feces
52176
52252
+
Met
CAT
[ENA]
¢þ
>WENV170539832
CWGO01000072
[CWGO] human gut metagenome; ENVO:feces
52261
52345
+
Leu
TAG
[ENA]
¢þ
>WENV170539849
CWGO01000081
[CWGO] human gut metagenome; ENVO:feces
52330
52419
+
Ser
CGA
[ENA]
¢þ
>WENV170539833
CWGO01000072
[CWGO] human gut metagenome; ENVO:feces
52454
52528
+
Gln
CTG
[ENA]
¢þ
>WENV170539826
CWGO01000067
[CWGO] human gut metagenome; ENVO:feces
54446
54371
-
Phe
GAA
[ENA]
¢þ
>WENV170539807
CWGO01000048
[CWGO] human gut metagenome; ENVO:feces
55258
55182
-
Arg
ACG
[ENA]
¢þ
>WENV170539845
CWGO01000080
[CWGO] human gut metagenome; ENVO:feces
57127
57213
+
Leu
GAG
[ENA]
¢þ
>WENV170539846
CWGO01000080
[CWGO] human gut metagenome; ENVO:feces
60385
60461
+
Met
CAT
[ENA]
¢þ
>WENV170539794
CWGO01000002
[CWGO] human gut metagenome; ENVO:feces
60614
60708
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170539822
CWGO01000066
[CWGO] human gut metagenome; ENVO:feces
67970
67884
-
Leu
TAA
[ENA]
¢þ
>WENV170539821
CWGO01000066
[CWGO] human gut metagenome; ENVO:feces
68055
67982
-
Cys
GCA
[ENA]
¢þ
>WENV170539820
CWGO01000066
[CWGO] human gut metagenome; ENVO:feces
68183
68108
-
Gly
GCC
[ENA]
¢þ
>WENV170539801
CWGO01000028
[CWGO] human gut metagenome; ENVO:feces
83228
83314
+
Leu
CAG
[ENA]
¢þ
>WENV170539802
CWGO01000028
[CWGO] human gut metagenome; ENVO:feces
83342
83428
+
Leu
CAG
[ENA]
¢þ
>WENV170539823
CWGO01000067
[CWGO] human gut metagenome; ENVO:feces
87470
87545
+
Gly
GCC
[ENA]
¢þ
>WENV170539824
CWGO01000067
[CWGO] human gut metagenome; ENVO:feces
87583
87658
+
Gly
GCC
[ENA]
¢þ
>WENV170539827
CWGO01000068
[CWGO] human gut metagenome; ENVO:feces
100701
100788
+
Ser
TGA
[ENA]
¢þ
>WENV170539828
CWGO01000071
[CWGO] human gut metagenome; ENVO:feces
106873
106957
+
Tyr
GTA
[ENA]
¢þ
>WENV170539829
CWGO01000071
[CWGO] human gut metagenome; ENVO:feces
107168
107252
+
Tyr
GTA
[ENA]
¢þ
>WENV170539847
CWGO01000080
[CWGO] human gut metagenome; ENVO:feces
137972
137897
-
Met
CAT
[ENA]
¢þ
>WENV170539813
CWGO01000052
[CWGO] human gut metagenome; ENVO:feces
142816
142892
+
Pro
GGG
[ENA]
¢þ
>WENV170539835
CWGO01000072
[CWGO] human gut metagenome; ENVO:feces
164170
164094
-
Arg
TCT
[ENA]
¢þ
>WENV170539808
CWGO01000049
[CWGO] human gut metagenome; ENVO:feces
170956
171032
+
Met
CAT
[ENA]
¢þ
>WENV170539825
CWGO01000067
[CWGO] human gut metagenome; ENVO:feces
221830
221914
+
Leu
CAA
[ENA]
¢þ
>WENV170539810
CWGO01000049
[CWGO] human gut metagenome; ENVO:feces
225579
225506
-
Gly
CCC
[ENA]
¢þ
>WENV170539809
CWGO01000049
[CWGO] human gut metagenome; ENVO:feces
304220
304295
+
Phe
GAA
[ENA]
¢þ
>WENV170539834
CWGO01000072
[CWGO] human gut metagenome; ENVO:feces
406757
406682
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK