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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[CWGP] human gut metagenome; ENVO:feces
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170539865
CWGP01000074
[CWGP] human gut metagenome; ENVO:feces
48
122
+
Lys
TTT
[ENA]
¢þ
>WENV170539885
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
53
128
+
Met
CAT
[ENA]
¢þ
>WENV170539854
CWGP01000013
[CWGP] human gut metagenome; ENVO:feces
59
134
+
Pro
TGG
[ENA]
¢þ
>WENV170539872
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
71
161
+
Ser
GGA
[ENA]
¢þ
>WENV170539866
CWGP01000074
[CWGP] human gut metagenome; ENVO:feces
136
218
+
Leu
TAG
[ENA]
¢þ
>WENV170539886
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
140
215
+
Met
CAT
[ENA]
¢þ
>WENV170539873
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
170
243
+
Glu
TTC
[ENA]
¢þ
>WENV170539867
CWGP01000074
[CWGP] human gut metagenome; ENVO:feces
224
300
+
Thr
TGT
[ENA]
¢þ
>WENV170539887
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
234
323
+
Ser
TGA
[ENA]
¢þ
>WENV170539874
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
263
335
+
Val
TAC
[ENA]
¢þ
>WENV170539868
CWGP01000074
[CWGP] human gut metagenome; ENVO:feces
308
379
+
Gly
GCC
[ENA]
¢þ
>WENV170539875
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
339
414
+
Asp
GTC
[ENA]
¢þ
>WENV170539869
CWGP01000074
[CWGP] human gut metagenome; ENVO:feces
396
481
+
Leu
TAA
[ENA]
¢þ
>WENV170539888
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
409
484
+
Met
CAT
[ENA]
¢þ
>WENV170539876
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
448
523
+
Phe
GAA
[ENA]
¢þ
>WENV170539870
CWGP01000074
[CWGP] human gut metagenome; ENVO:feces
492
567
+
Arg
ACG
[ENA]
¢þ
>WENV170539877
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
524
606
+
Tyr
GTA
[ENA]
¢þ
>WENV170539889
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
530
606
+
Asp
GTC
[ENA]
¢þ
>WENV170539890
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
608
678
+
Gly
TCC
[ENA]
¢þ
>WENV170539878
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
612
685
+
Trp
CCA
[ENA]
¢þ
>WENV170539891
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
694
769
+
Ile
GAT
[ENA]
¢þ
>WENV170539879
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
715
788
+
His
GTG
[ENA]
¢þ
>WENV170539892
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
793
882
+
Ser
GCT
[ENA]
¢þ
>WENV170539880
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
797
870
+
Gln
TTG
[ENA]
¢þ
>WENV170539893
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
889
960
+
Glu
TTC
[ENA]
¢þ
>WENV170539881
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
909
979
+
Cys
GCA
[ENA]
¢þ
>WENV170539882
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
1005
1090
+
Leu
CAA
[ENA]
¢þ
>WENV170539894
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
1090
1167
+
Met
CAT
[ENA]
¢þ
>WENV170539895
CWGP01000090
[CWGP] human gut metagenome; ENVO:feces
1181
1255
+
Asp
GTC
[ENA]
¢þ
>WENV170539883
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
1215
1300
+
Leu
CAA
[ENA]
¢þ
>WENV170539864
CWGP01000046
[CWGP] human gut metagenome; ENVO:feces
6981
6907
-
Thr
GGT
[ENA]
¢þ
>WENV170539863
CWGP01000046
[CWGP] human gut metagenome; ENVO:feces
7154
7231
+
Asn
GTT
[ENA]
¢þ
>WENV170539856
CWGP01000017
[CWGP] human gut metagenome; ENVO:feces
7267
7194
-
Glu
TTC
[ENA]
¢þ
>WENV170539855
CWGP01000017
[CWGP] human gut metagenome; ENVO:feces
7354
7279
-
Ile
GAT
[ENA]
¢þ
>WENV170539860
CWGP01000038
[CWGP] human gut metagenome; ENVO:feces
13378
13451
+
Arg
CCG
[ENA]
¢þ
>WENV170539857
CWGP01000018
[CWGP] human gut metagenome; ENVO:feces
38700
38783
+
Tyr
GTA
[ENA]
¢þ
>WENV170539858
CWGP01000018
[CWGP] human gut metagenome; ENVO:feces
38784
38859
+
Gln
TTG
[ENA]
¢þ
>WENV170539852
CWGP01000002
[CWGP] human gut metagenome; ENVO:feces
65949
66036
+
Ser
CGA
[ENA]
¢þ
>WENV170539862
CWGP01000045
[CWGP] human gut metagenome; ENVO:feces
69620
69694
+
Thr
CGT
[ENA]
¢þ
>WENV170539853
CWGP01000009
[CWGP] human gut metagenome; ENVO:feces
114452
114533
+
Leu
GAG
[ENA]
¢þ
>WENV170539861
CWGP01000038
[CWGP] human gut metagenome; ENVO:feces
121734
121806
+
Lys
CTT
[ENA]
¢þ
>WENV170539884
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
122237
122164
-
Arg
CCT
[ENA]
¢þ
>WENV170539871
CWGP01000081
[CWGP] human gut metagenome; ENVO:feces
131538
131613
+
Arg
TCT
[ENA]
¢þ
>WENV170539859
CWGP01000030
[CWGP] human gut metagenome; ENVO:feces
299088
299007
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK