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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[CWGQ] human gut metagenome; ENVO:feces
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170539896
CWGQ01000001
[CWGQ] human gut metagenome; ENVO:feces
78
153
+
Trp
CCA
[ENA]
¢þ
>WENV170539930
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
234
159
-
Lys
TTT
[ENA]
¢þ
>WENV170539929
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
444
369
-
Lys
TTT
[ENA]
¢þ
>WENV170539928
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
666
591
-
Lys
TTT
[ENA]
¢þ
>WENV170539927
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
745
670
-
Val
TAC
[ENA]
¢þ
>WENV170539926
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
970
895
-
Lys
TTT
[ENA]
¢þ
>WENV170539925
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
1049
974
-
Val
TAC
[ENA]
¢þ
>WENV170539924
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
1250
1175
-
Lys
TTT
[ENA]
¢þ
>WENV170539945
CWGQ01000082
[CWGQ] human gut metagenome; ENVO:feces
1621
1532
-
Ser
CGA
[ENA]
¢þ
>WENV170539941
CWGQ01000082
[CWGQ] human gut metagenome; ENVO:feces
2613
2688
+
Asn
GTT
[ENA]
¢þ
>WENV170539932
CWGQ01000056
[CWGQ] human gut metagenome; ENVO:feces
3196
3109
-
Ser
GGA
[ENA]
¢þ
>WENV170539902
CWGQ01000022
[CWGQ] human gut metagenome; ENVO:feces
3666
3741
+
Thr
TGT
[ENA]
¢þ
>WENV170539903
CWGQ01000022
[CWGQ] human gut metagenome; ENVO:feces
3752
3836
+
Tyr
GTA
[ENA]
¢þ
>WENV170539904
CWGQ01000022
[CWGQ] human gut metagenome; ENVO:feces
3952
4026
+
Gly
TCC
[ENA]
¢þ
>WENV170539942
CWGQ01000082
[CWGQ] human gut metagenome; ENVO:feces
8338
8413
+
Asn
GTT
[ENA]
¢þ
>WENV170539905
CWGQ01000025
[CWGQ] human gut metagenome; ENVO:feces
14140
14064
-
Asp
GTC
[ENA]
¢þ
>WENV170539944
CWGQ01000082
[CWGQ] human gut metagenome; ENVO:feces
17337
17262
-
Asn
GTT
[ENA]
¢þ
>WENV170539911
CWGQ01000041
[CWGQ] human gut metagenome; ENVO:feces
17636
17720
+
Leu
CAA
[ENA]
¢þ
>WENV170539943
CWGQ01000082
[CWGQ] human gut metagenome; ENVO:feces
19095
19170
+
Asn
GTT
[ENA]
¢þ
>WENV170539916
CWGQ01000046
[CWGQ] human gut metagenome; ENVO:feces
20730
20655
-
Ala
GGC
[ENA]
¢þ
>WENV170539915
CWGQ01000046
[CWGQ] human gut metagenome; ENVO:feces
20847
20772
-
Ala
GGC
[ENA]
¢þ
>WENV170539913
CWGQ01000046
[CWGQ] human gut metagenome; ENVO:feces
23546
23621
+
Val
TAC
[ENA]
¢þ
>WENV170539914
CWGQ01000046
[CWGQ] human gut metagenome; ENVO:feces
23667
23742
+
Val
TAC
[ENA]
¢þ
>WENV170539906
CWGQ01000026
[CWGQ] human gut metagenome; ENVO:feces
29981
30057
+
Pro
CGG
[ENA]
¢þ
>WENV170539948
CWGQ01000087
[CWGQ] human gut metagenome; ENVO:feces
30987
31062
+
Phe
GAA
[ENA]
¢þ
>WENV170539933
CWGQ01000062
[CWGQ] human gut metagenome; ENVO:feces
34404
34480
+
Arg
TCT
[ENA]
¢þ
>WENV170539897
CWGQ01000001
[CWGQ] human gut metagenome; ENVO:feces
38185
38261
+
Arg
CCG
[ENA]
¢þ
>WENV170539898
CWGQ01000001
[CWGQ] human gut metagenome; ENVO:feces
38317
38392
+
His
GTG
[ENA]
¢þ
>WENV170539899
CWGQ01000001
[CWGQ] human gut metagenome; ENVO:feces
38416
38502
+
Leu
CAG
[ENA]
¢þ
>WENV170539910
CWGQ01000035
[CWGQ] human gut metagenome; ENVO:feces
38535
38449
-
Leu
CAG
[ENA]
¢þ
>WENV170539900
CWGQ01000001
[CWGQ] human gut metagenome; ENVO:feces
38545
38621
+
Pro
TGG
[ENA]
¢þ
>WENV170539931
CWGQ01000053
[CWGQ] human gut metagenome; ENVO:feces
39351
39424
+
Gly
CCC
[ENA]
¢þ
>WENV170539938
CWGQ01000071
[CWGQ] human gut metagenome; ENVO:feces
41351
41276
-
Thr
CGT
[ENA]
¢þ
>WENV170539934
CWGQ01000066
[CWGQ] human gut metagenome; ENVO:feces
44772
44856
+
Tyr
GTA
[ENA]
¢þ
>WENV170539917
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
59868
59944
+
Met
CAT
[ENA]
¢þ
>WENV170539918
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
59953
60037
+
Leu
TAG
[ENA]
¢þ
>WENV170539919
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
60061
60135
+
Gln
TTG
[ENA]
¢þ
>WENV170539920
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
60172
60246
+
Gln
TTG
[ENA]
¢þ
>WENV170539921
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
60270
60346
+
Met
CAT
[ENA]
¢þ
>WENV170539922
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
60394
60468
+
Gln
CTG
[ENA]
¢þ
>WENV170539923
CWGQ01000049
[CWGQ] human gut metagenome; ENVO:feces
60544
60618
+
Gln
CTG
[ENA]
¢þ
>WENV170539912
CWGQ01000043
[CWGQ] human gut metagenome; ENVO:feces
84204
84291
+
Ser
TGA
[ENA]
¢þ
>WENV170539939
CWGQ01000076
[CWGQ] human gut metagenome; ENVO:feces
92971
93057
+
Leu
GAG
[ENA]
¢þ
>WENV170539901
CWGQ01000016
[CWGQ] human gut metagenome; ENVO:feces
98265
98359
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170539949
CWGQ01000087
[CWGQ] human gut metagenome; ENVO:feces
103648
103723
+
Met
CAT
[ENA]
¢þ
>WENV170539946
CWGQ01000083
[CWGQ] human gut metagenome; ENVO:feces
131938
132014
+
Pro
GGG
[ENA]
¢þ
>WENV170539937
CWGQ01000067
[CWGQ] human gut metagenome; ENVO:feces
151542
151456
-
Leu
TAA
[ENA]
¢þ
>WENV170539936
CWGQ01000067
[CWGQ] human gut metagenome; ENVO:feces
151629
151556
-
Cys
GCA
[ENA]
¢þ
>WENV170539935
CWGQ01000067
[CWGQ] human gut metagenome; ENVO:feces
151745
151670
-
Gly
GCC
[ENA]
¢þ
>WENV170539907
CWGQ01000031
[CWGQ] human gut metagenome; ENVO:feces
151985
152077
+
Ser
GCT
[ENA]
¢þ
>WENV170539908
CWGQ01000031
[CWGQ] human gut metagenome; ENVO:feces
152270
152346
+
Arg
ACG
[ENA]
¢þ
>WENV170539909
CWGQ01000031
[CWGQ] human gut metagenome; ENVO:feces
152575
152651
+
Arg
ACG
[ENA]
¢þ
>WENV170539947
CWGQ01000083
[CWGQ] human gut metagenome; ENVO:feces
248773
248847
+
Arg
CCT
[ENA]
¢þ
>WENV170539940
CWGQ01000081
[CWGQ] human gut metagenome; ENVO:feces
297208
297284
+
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK