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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWGR] human gut metagenome; ENVO:feces
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170539975
CWGR01000093
[CWGR] human gut metagenome; ENVO:feces
9
82
+
Pro
CGG
[ENA]
¢þ
>WENV170539968
CWGR01000073
[CWGR] human gut metagenome; ENVO:feces
85
157
+
Thr
GGT
[ENA]
¢þ
>WENV170539972
CWGR01000081
[CWGR] human gut metagenome; ENVO:feces
267
183
-
Leu
TAG
[ENA]
¢þ
>WENV170539969
CWGR01000073
[CWGR] human gut metagenome; ENVO:feces
1445
1520
+
Trp
CCA
[ENA]
¢þ
>WENV170539973
CWGR01000085
[CWGR] human gut metagenome; ENVO:feces
2113
2037
-
Asp
GTC
[ENA]
¢þ
>WENV170539958
CWGR01000038
[CWGR] human gut metagenome; ENVO:feces
7437
7363
-
Met
CAT
[ENA]
¢þ
>WENV170539974
CWGR01000088
[CWGR] human gut metagenome; ENVO:feces
7727
7651
-
Thr
TGT
[ENA]
¢þ
>WENV170539980
CWGR01000103
[CWGR] human gut metagenome; ENVO:feces
7790
7703
-
Ser
TGA
[ENA]
¢þ
>WENV170539966
CWGR01000072
[CWGR] human gut metagenome; ENVO:feces
8663
8737
+
Asn
GTT
[ENA]
¢þ
>WENV170539967
CWGR01000072
[CWGR] human gut metagenome; ENVO:feces
8766
8842
+
Asn
GTT
[ENA]
¢þ
>WENV170539978
CWGR01000098
[CWGR] human gut metagenome; ENVO:feces
9484
9557
+
Lys
TTT
[ENA]
¢þ
>WENV170539986
CWGR01000146
[CWGR] human gut metagenome; ENVO:feces
9942
10016
+
Arg
CCT
[ENA]
¢þ
>WENV170539962
CWGR01000045
[CWGR] human gut metagenome; ENVO:feces
11338
11261
-
Pro
GGG
[ENA]
¢þ
>WENV170539977
CWGR01000093
[CWGR] human gut metagenome; ENVO:feces
11793
11707
-
Leu
TAA
[ENA]
¢þ
>WENV170539976
CWGR01000093
[CWGR] human gut metagenome; ENVO:feces
11880
11807
-
Gly
GCC
[ENA]
¢þ
>WENV170539952
CWGR01000006
[CWGR] human gut metagenome; ENVO:feces
13364
13290
-
Glu
CTC
[ENA]
¢þ
>WENV170539951
CWGR01000006
[CWGR] human gut metagenome; ENVO:feces
13529
13442
-
Ser
GCT
[ENA]
¢þ
>WENV170539959
CWGR01000041
[CWGR] human gut metagenome; ENVO:feces
14593
14667
+
Asp
GTC
[ENA]
¢þ
>WENV170539960
CWGR01000041
[CWGR] human gut metagenome; ENVO:feces
14697
14773
+
Asp
GTC
[ENA]
¢þ
>WENV170539957
CWGR01000030
[CWGR] human gut metagenome; ENVO:feces
17109
17036
-
Trp
CCA
[ENA]
¢þ
>WENV170539979
CWGR01000102
[CWGR] human gut metagenome; ENVO:feces
18717
18788
+
Gln
TTG
[ENA]
¢þ
>WENV170539988
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
19627
19700
+
Gly
GCC
[ENA]
¢þ
>WENV170539989
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
19725
19809
+
Leu
CAG
[ENA]
¢þ
>WENV170539990
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
19844
19928
+
Leu
GAG
[ENA]
¢þ
>WENV170539991
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
20051
20135
+
Leu
CAG
[ENA]
¢þ
>WENV170539992
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
20140
20213
+
Gly
GCC
[ENA]
¢þ
>WENV170539950
CWGR01000005
[CWGR] human gut metagenome; ENVO:feces
22786
22713
-
Lys
TTT
[ENA]
¢þ
>WENV170539984
CWGR01000135
[CWGR] human gut metagenome; ENVO:feces
23455
23382
-
Thr
CGT
[ENA]
¢þ
>WENV170539982
CWGR01000116
[CWGR] human gut metagenome; ENVO:feces
25204
25289
+
Tyr
GTA
[ENA]
¢þ
>WENV170539997
CWGR01000180
[CWGR] human gut metagenome; ENVO:feces
26236
26312
+
Met
CAT
[ENA]
¢þ
>WENV170539985
CWGR01000145
[CWGR] human gut metagenome; ENVO:feces
26273
26189
-
Leu
CAA
[ENA]
¢þ
>WENV170539954
CWGR01000008
[CWGR] human gut metagenome; ENVO:feces
28191
28279
+
Ser
GGA
[ENA]
¢þ
>WENV170539983
CWGR01000117
[CWGR] human gut metagenome; ENVO:feces
32052
32128
+
Thr
TGT
[ENA]
¢þ
>WENV170539955
CWGR01000017
[CWGR] human gut metagenome; ENVO:feces
37968
38043
+
Met
CAT
[ENA]
¢þ
>WENV170539981
CWGR01000111
[CWGR] human gut metagenome; ENVO:feces
38212
38284
+
Cys
GCA
[ENA]
¢þ
>WENV170539963
CWGR01000050
[CWGR] human gut metagenome; ENVO:feces
42438
42365
-
Phe
GAA
[ENA]
¢þ
>WENV170539956
CWGR01000029
[CWGR] human gut metagenome; ENVO:feces
44241
44165
-
Arg
TCT
[ENA]
¢þ
>WENV170539987
CWGR01000159
[CWGR] human gut metagenome; ENVO:feces
55386
55462
+
Thr
TGT
[ENA]
¢þ
>WENV170539961
CWGR01000045
[CWGR] human gut metagenome; ENVO:feces
55951
56024
+
Gln
CTG
[ENA]
¢þ
>WENV170539965
CWGR01000065
[CWGR] human gut metagenome; ENVO:feces
59954
59879
-
Val
TAC
[ENA]
¢þ
>WENV170539964
CWGR01000065
[CWGR] human gut metagenome; ENVO:feces
60211
60136
-
Val
TAC
[ENA]
¢þ
>WENV170539993
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
65416
65491
+
Gly
CCC
[ENA]
¢þ
>WENV170539953
CWGR01000007
[CWGR] human gut metagenome; ENVO:feces
67914
67988
+
Glu
TTC
[ENA]
¢þ
>WENV170539970
CWGR01000079
[CWGR] human gut metagenome; ENVO:feces
130723
130798
+
His
GTG
[ENA]
¢þ
>WENV170539994
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
160238
160315
+
Pro
TGG
[ENA]
¢þ
>WENV170539971
CWGR01000079
[CWGR] human gut metagenome; ENVO:feces
189364
189438
+
Ala
GGC
[ENA]
¢þ
>WENV170539995
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
221511
221586
+
Lys
CTT
[ENA]
¢þ
>WENV170539996
CWGR01000176
[CWGR] human gut metagenome; ENVO:feces
224858
224933
+
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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