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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWGT] human gut metagenome; ENVO:feces
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540038
CWGT01000026
[CWGT] human gut metagenome; ENVO:feces
123
206
+
Leu
TAG
[ENA]
¢þ
>WENV170540044
CWGT01000048
[CWGT] human gut metagenome; ENVO:feces
139
216
+
Asp
GTC
[ENA]
¢þ
>WENV170540054
CWGT01000068
[CWGT] human gut metagenome; ENVO:feces
160
85
-
Lys
TTT
[ENA]
¢þ
>WENV170540067
CWGT01000080
[CWGT] human gut metagenome; ENVO:feces
894
820
-
Thr
TGT
[ENA]
¢þ
>WENV170540055
CWGT01000069
[CWGT] human gut metagenome; ENVO:feces
1524
1449
-
Thr
CGT
[ENA]
¢þ
>WENV170540064
CWGT01000079
[CWGT] human gut metagenome; ENVO:feces
1806
1732
-
Val
CAC
[ENA]
¢þ
>WENV170540043
CWGT01000045
[CWGT] human gut metagenome; ENVO:feces
2005
1919
-
Leu
CAA
[ENA]
¢þ
>WENV170540052
CWGT01000064
[CWGT] human gut metagenome; ENVO:feces
2472
2561
+
Ser
TGA
[ENA]
¢þ
>WENV170540071
CWGT01000084
[CWGT] human gut metagenome; ENVO:feces
4491
4567
+
Arg
ACG
[ENA]
¢þ
>WENV170540072
CWGT01000084
[CWGT] human gut metagenome; ENVO:feces
7336
7426
+
Ser
GCT
[ENA]
¢þ
>WENV170540029
CWGT01000005
[CWGT] human gut metagenome; ENVO:feces
10357
10447
+
Ser
GGA
[ENA]
¢þ
>WENV170540030
CWGT01000005
[CWGT] human gut metagenome; ENVO:feces
10496
10586
+
Ser
CGA
[ENA]
¢þ
>WENV170540053
CWGT01000068
[CWGT] human gut metagenome; ENVO:feces
11683
11609
-
Gly
CCC
[ENA]
¢þ
>WENV170540035
CWGT01000019
[CWGT] human gut metagenome; ENVO:feces
13822
13738
-
Leu
TAA
[ENA]
¢þ
>WENV170540060
CWGT01000075
[CWGT] human gut metagenome; ENVO:feces
15787
15863
+
Glu
TTC
[ENA]
¢þ
>WENV170540033
CWGT01000005
[CWGT] human gut metagenome; ENVO:feces
17736
17660
-
Ile
GAT
[ENA]
¢þ
>WENV170540032
CWGT01000005
[CWGT] human gut metagenome; ENVO:feces
17922
17847
-
Ala
TGC
[ENA]
¢þ
>WENV170540031
CWGT01000005
[CWGT] human gut metagenome; ENVO:feces
18066
17990
-
Ile
GAT
[ENA]
¢þ
>WENV170540070
CWGT01000083
[CWGT] human gut metagenome; ENVO:feces
20989
20915
-
Val
GAC
[ENA]
¢þ
>WENV170540051
CWGT01000061
[CWGT] human gut metagenome; ENVO:feces
21050
20975
-
Trp
CCA
[ENA]
¢þ
>WENV170540066
CWGT01000080
[CWGT] human gut metagenome; ENVO:feces
21352
21276
-
Pro
CGG
[ENA]
¢þ
>WENV170540059
CWGT01000070
[CWGT] human gut metagenome; ENVO:feces
22258
22183
-
Ala
GGC
[ENA]
¢þ
>WENV170540050
CWGT01000061
[CWGT] human gut metagenome; ENVO:feces
22856
22780
-
Met
CAT
[ENA]
¢þ
>WENV170540049
CWGT01000061
[CWGT] human gut metagenome; ENVO:feces
22935
22860
-
Thr
GGT
[ENA]
¢þ
>WENV170540048
CWGT01000061
[CWGT] human gut metagenome; ENVO:feces
23028
22943
-
Tyr
GTA
[ENA]
¢þ
>WENV170540065
CWGT01000080
[CWGT] human gut metagenome; ENVO:feces
30623
30698
+
Val
TAC
[ENA]
¢þ
>WENV170540034
CWGT01000010
[CWGT] human gut metagenome; ENVO:feces
34532
34456
-
Met
CAT
[ENA]
¢þ
>WENV170540063
CWGT01000078
[CWGT] human gut metagenome; ENVO:feces
35612
35536
-
Pro
GGG
[ENA]
¢þ
>WENV170540039
CWGT01000027
[CWGT] human gut metagenome; ENVO:feces
39097
39173
+
Arg
CCG
[ENA]
¢þ
>WENV170540045
CWGT01000056
[CWGT] human gut metagenome; ENVO:feces
40702
40791
+
Leu
GAG
[ENA]
¢þ
>WENV170540046
CWGT01000056
[CWGT] human gut metagenome; ENVO:feces
44203
44276
+
Cys
GCA
[ENA]
¢þ
>WENV170540047
CWGT01000056
[CWGT] human gut metagenome; ENVO:feces
44319
44394
+
Gly
GCC
[ENA]
¢þ
>WENV170540062
CWGT01000078
[CWGT] human gut metagenome; ENVO:feces
52924
52849
-
Met
CAT
[ENA]
¢þ
>WENV170540061
CWGT01000078
[CWGT] human gut metagenome; ENVO:feces
53194
53119
-
Ala
GGC
[ENA]
¢þ
>WENV170540037
CWGT01000024
[CWGT] human gut metagenome; ENVO:feces
55942
55864
-
Glu
CTC
[ENA]
¢þ
>WENV170540036
CWGT01000024
[CWGT] human gut metagenome; ENVO:feces
56032
55959
-
Gln
CTG
[ENA]
¢þ
>WENV170540074
CWGT01000087
[CWGT] human gut metagenome; ENVO:feces
56358
56434
+
Ala
CGC
[ENA]
¢þ
>WENV170540058
CWGT01000070
[CWGT] human gut metagenome; ENVO:feces
58119
58043
-
Glu
CTC
[ENA]
¢þ
>WENV170540073
CWGT01000085
[CWGT] human gut metagenome; ENVO:feces
62354
62429
+
Arg
CCT
[ENA]
¢þ
>WENV170540068
CWGT01000083
[CWGT] human gut metagenome; ENVO:feces
63157
63232
+
Phe
GAA
[ENA]
¢þ
>WENV170540069
CWGT01000083
[CWGT] human gut metagenome; ENVO:feces
69444
69530
+
Leu
CAG
[ENA]
¢þ
>WENV170540075
CWGT01000087
[CWGT] human gut metagenome; ENVO:feces
74656
74732
+
His
GTG
[ENA]
¢þ
>WENV170540076
CWGT01000087
[CWGT] human gut metagenome; ENVO:feces
74755
74830
+
Lys
CTT
[ENA]
¢þ
>WENV170540041
CWGT01000037
[CWGT] human gut metagenome; ENVO:feces
74993
75069
+
Pro
TGG
[ENA]
¢þ
>WENV170540042
CWGT01000037
[CWGT] human gut metagenome; ENVO:feces
75076
75149
+
Gly
TCC
[ENA]
¢þ
>WENV170540057
CWGT01000070
[CWGT] human gut metagenome; ENVO:feces
121096
121022
-
Asn
GTT
[ENA]
¢þ
>WENV170540040
CWGT01000027
[CWGT] human gut metagenome; ENVO:feces
127862
127787
-
Gln
TTG
[ENA]
¢þ
>WENV170540056
CWGT01000070
[CWGT] human gut metagenome; ENVO:feces
159154
159078
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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