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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWGU] human gut metagenome; ENVO:feces
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540085
CWGU01000033
[CWGU] human gut metagenome; ENVO:feces
1511
1438
-
Trp
CCA
[ENA]
¢þ
>WENV170540098
CWGU01000043
[CWGU] human gut metagenome; ENVO:feces
2568
2642
+
Val
CAC
[ENA]
¢þ
>WENV170540099
CWGU01000043
[CWGU] human gut metagenome; ENVO:feces
2647
2722
+
Ala
GGC
[ENA]
¢þ
>WENV170540082
CWGU01000010
[CWGU] human gut metagenome; ENVO:feces
2933
3019
+
Leu
CAG
[ENA]
¢þ
>WENV170540093
CWGU01000037
[CWGU] human gut metagenome; ENVO:feces
4553
4478
-
Trp
CCA
[ENA]
¢þ
>WENV170540092
CWGU01000037
[CWGU] human gut metagenome; ENVO:feces
6276
6200
-
Met
CAT
[ENA]
¢þ
>WENV170540091
CWGU01000037
[CWGU] human gut metagenome; ENVO:feces
6361
6286
-
Thr
GGT
[ENA]
¢þ
>WENV170540090
CWGU01000037
[CWGU] human gut metagenome; ENVO:feces
6448
6365
-
Tyr
GTA
[ENA]
¢þ
>WENV170540110
CWGU01000050
[CWGU] human gut metagenome; ENVO:feces
6468
6379
-
Ser
CGA
[ENA]
¢þ
>WENV170540109
CWGU01000050
[CWGU] human gut metagenome; ENVO:feces
6602
6512
-
Ser
GGA
[ENA]
¢þ
>WENV170540086
CWGU01000037
[CWGU] human gut metagenome; ENVO:feces
6850
6924
+
Thr
TGT
[ENA]
¢þ
>WENV170540111
CWGU01000053
[CWGU] human gut metagenome; ENVO:feces
7488
7563
+
Lys
CTT
[ENA]
¢þ
>WENV170540112
CWGU01000053
[CWGU] human gut metagenome; ENVO:feces
7600
7675
+
Lys
CTT
[ENA]
¢þ
>WENV170540116
CWGU01000053
[CWGU] human gut metagenome; ENVO:feces
8168
8092
-
Arg
TCT
[ENA]
¢þ
>WENV170540084
CWGU01000033
[CWGU] human gut metagenome; ENVO:feces
10084
10009
-
Ala
CGC
[ENA]
¢þ
>WENV170540096
CWGU01000042
[CWGU] human gut metagenome; ENVO:feces
10131
10207
+
Arg
CCG
[ENA]
¢þ
>WENV170540083
CWGU01000031
[CWGU] human gut metagenome; ENVO:feces
12128
12218
+
Ser
TGA
[ENA]
¢þ
>WENV170540113
CWGU01000053
[CWGU] human gut metagenome; ENVO:feces
12974
13050
+
Pro
TGG
[ENA]
¢þ
>WENV170540114
CWGU01000053
[CWGU] human gut metagenome; ENVO:feces
13055
13128
+
Gly
TCC
[ENA]
¢þ
>WENV170540077
CWGU01000004
[CWGU] human gut metagenome; ENVO:feces
18484
18558
+
Gly
CCC
[ENA]
¢þ
>WENV170540106
CWGU01000046
[CWGU] human gut metagenome; ENVO:feces
19045
18969
-
Pro
CGG
[ENA]
¢þ
>WENV170540115
CWGU01000053
[CWGU] human gut metagenome; ENVO:feces
19167
19081
-
Leu
TAG
[ENA]
¢þ
>WENV170540078
CWGU01000004
[CWGU] human gut metagenome; ENVO:feces
20275
20350
+
Lys
TTT
[ENA]
¢þ
>WENV170540108
CWGU01000050
[CWGU] human gut metagenome; ENVO:feces
23061
22986
-
Ala
TGC
[ENA]
¢þ
>WENV170540107
CWGU01000050
[CWGU] human gut metagenome; ENVO:feces
23279
23203
-
Ile
GAT
[ENA]
¢þ
>WENV170540105
CWGU01000046
[CWGU] human gut metagenome; ENVO:feces
25805
25731
-
Val
TAC
[ENA]
¢þ
>WENV170540100
CWGU01000043
[CWGU] human gut metagenome; ENVO:feces
28240
28316
+
Pro
GGG
[ENA]
¢þ
>WENV170540079
CWGU01000004
[CWGU] human gut metagenome; ENVO:feces
28613
28688
+
Arg
CCT
[ENA]
¢þ
>WENV170540087
CWGU01000037
[CWGU] human gut metagenome; ENVO:feces
29596
29670
+
Glu
TTC
[ENA]
¢þ
>WENV170540095
CWGU01000041
[CWGU] human gut metagenome; ENVO:feces
29976
29901
-
Phe
GAA
[ENA]
¢þ
>WENV170540089
CWGU01000037
[CWGU] human gut metagenome; ENVO:feces
33865
33781
-
Leu
TAA
[ENA]
¢þ
>WENV170540094
CWGU01000039
[CWGU] human gut metagenome; ENVO:feces
36223
36147
-
Met
CAT
[ENA]
¢þ
>WENV170540121
CWGU01000054
[CWGU] human gut metagenome; ENVO:feces
36752
36677
-
Thr
CGT
[ENA]
¢þ
>WENV170540081
CWGU01000004
[CWGU] human gut metagenome; ENVO:feces
36756
36666
-
Ser
GCT
[ENA]
¢þ
>WENV170540080
CWGU01000004
[CWGU] human gut metagenome; ENVO:feces
36961
37037
+
Arg
ACG
[ENA]
¢þ
>WENV170540120
CWGU01000054
[CWGU] human gut metagenome; ENVO:feces
50050
49977
-
Cys
GCA
[ENA]
¢þ
>WENV170540119
CWGU01000054
[CWGU] human gut metagenome; ENVO:feces
50165
50090
-
Gly
GCC
[ENA]
¢þ
>WENV170540122
CWGU01000064
[CWGU] human gut metagenome; ENVO:feces
52280
52352
+
Gln
TTG
[ENA]
¢þ
>WENV170540118
CWGU01000054
[CWGU] human gut metagenome; ENVO:feces
53664
53574
-
Leu
GAG
[ENA]
¢þ
>WENV170540097
CWGU01000042
[CWGU] human gut metagenome; ENVO:feces
67857
67782
-
Met
CAT
[ENA]
¢þ
>WENV170540117
CWGU01000054
[CWGU] human gut metagenome; ENVO:feces
73618
73692
+
Val
GAC
[ENA]
¢þ
>WENV170540088
CWGU01000037
[CWGU] human gut metagenome; ENVO:feces
84024
83948
-
Asp
GTC
[ENA]
¢þ
>WENV170540101
CWGU01000043
[CWGU] human gut metagenome; ENVO:feces
100696
100770
+
Asn
GTT
[ENA]
¢þ
>WENV170540102
CWGU01000043
[CWGU] human gut metagenome; ENVO:feces
152664
152737
+
Gln
CTG
[ENA]
¢þ
>WENV170540103
CWGU01000043
[CWGU] human gut metagenome; ENVO:feces
152764
152840
+
Glu
CTC
[ENA]
¢þ
>WENV170540104
CWGU01000043
[CWGU] human gut metagenome; ENVO:feces
152876
152952
+
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK