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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[CWGV] human gut metagenome; ENVO:feces
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540124
CWGV01000005
[CWGV] human gut metagenome; ENVO:feces
2159
2235
+
Asp
GTC
[ENA]
¢þ
>WENV170540163
CWGV01000075
[CWGV] human gut metagenome; ENVO:feces
2353
2280
-
Ala
TGC
[ENA]
¢þ
>WENV170540162
CWGV01000075
[CWGV] human gut metagenome; ENVO:feces
2469
2395
-
Ile
GAT
[ENA]
¢þ
>WENV170540126
CWGV01000007
[CWGV] human gut metagenome; ENVO:feces
2968
2893
-
Trp
CCA
[ENA]
¢þ
>WENV170540123
CWGV01000004
[CWGV] human gut metagenome; ENVO:feces
5314
5388
+
Val
TAC
[ENA]
¢þ
>WENV170540150
CWGV01000047
[CWGV] human gut metagenome; ENVO:feces
6622
6537
-
Leu
CAG
[ENA]
¢þ
>WENV170540125
CWGV01000005
[CWGV] human gut metagenome; ENVO:feces
9752
9826
+
Met
CAT
[ENA]
¢þ
>WENV170540135
CWGV01000020
[CWGV] human gut metagenome; ENVO:feces
10584
10657
+
Thr
CGT
[ENA]
¢þ
>WENV170540136
CWGV01000020
[CWGV] human gut metagenome; ENVO:feces
10744
10827
+
Leu
TAG
[ENA]
¢þ
>WENV170540143
CWGV01000043
[CWGV] human gut metagenome; ENVO:feces
11135
11062
-
Gly
TCC
[ENA]
¢þ
>WENV170540168
CWGV01000080
[CWGV] human gut metagenome; ENVO:feces
12589
12515
-
Val
GAC
[ENA]
¢þ
>WENV170540167
CWGV01000080
[CWGV] human gut metagenome; ENVO:feces
12701
12630
-
Cys
GCA
[ENA]
¢þ
>WENV170540166
CWGV01000080
[CWGV] human gut metagenome; ENVO:feces
12801
12726
-
Gly
GCC
[ENA]
¢þ
>WENV170540137
CWGV01000020
[CWGV] human gut metagenome; ENVO:feces
14883
14956
+
Thr
CGT
[ENA]
¢þ
>WENV170540127
CWGV01000008
[CWGV] human gut metagenome; ENVO:feces
16164
16091
-
Arg
CCT
[ENA]
¢þ
>WENV170540128
CWGV01000010
[CWGV] human gut metagenome; ENVO:feces
16349
16273
-
Pro
GGG
[ENA]
¢þ
>WENV170540159
CWGV01000072
[CWGV] human gut metagenome; ENVO:feces
16763
16838
+
His
GTG
[ENA]
¢þ
>WENV170540138
CWGV01000032
[CWGV] human gut metagenome; ENVO:feces
21348
21276
-
Glu
TTC
[ENA]
¢þ
>WENV170540142
CWGV01000038
[CWGV] human gut metagenome; ENVO:feces
22083
22007
-
Met
CAT
[ENA]
¢þ
>WENV170540129
CWGV01000011
[CWGV] human gut metagenome; ENVO:feces
22218
22300
+
Tyr
GTA
[ENA]
¢þ
>WENV170540130
CWGV01000011
[CWGV] human gut metagenome; ENVO:feces
22377
22453
+
Met
CAT
[ENA]
¢þ
>WENV170540131
CWGV01000011
[CWGV] human gut metagenome; ENVO:feces
29251
29340
+
Ser
GCT
[ENA]
¢þ
>WENV170540144
CWGV01000047
[CWGV] human gut metagenome; ENVO:feces
31140
31213
+
Gly
CCC
[ENA]
¢þ
>WENV170540139
CWGV01000038
[CWGV] human gut metagenome; ENVO:feces
37721
37796
+
Arg
CCG
[ENA]
¢þ
>WENV170540151
CWGV01000065
[CWGV] human gut metagenome; ENVO:feces
39577
39487
-
Leu
GAG
[ENA]
¢þ
>WENV170540161
CWGV01000074
[CWGV] human gut metagenome; ENVO:feces
45894
45968
+
Thr
TGT
[ENA]
¢þ
>WENV170540140
CWGV01000038
[CWGV] human gut metagenome; ENVO:feces
54671
54743
+
Val
GAC
[ENA]
¢þ
>WENV170540141
CWGV01000038
[CWGV] human gut metagenome; ENVO:feces
54791
54866
+
Val
CAC
[ENA]
¢þ
>WENV170540132
CWGV01000011
[CWGV] human gut metagenome; ENVO:feces
66383
66470
+
Ser
CGA
[ENA]
¢þ
>WENV170540160
CWGV01000072
[CWGV] human gut metagenome; ENVO:feces
69935
69859
-
Arg
TCT
[ENA]
¢þ
>WENV170540158
CWGV01000071
[CWGV] human gut metagenome; ENVO:feces
74535
74461
-
Arg
ACG
[ENA]
¢þ
>WENV170540157
CWGV01000071
[CWGV] human gut metagenome; ENVO:feces
74638
74564
-
Arg
ACG
[ENA]
¢þ
>WENV170540164
CWGV01000080
[CWGV] human gut metagenome; ENVO:feces
74814
74887
+
Asn
GTT
[ENA]
¢þ
>WENV170540165
CWGV01000080
[CWGV] human gut metagenome; ENVO:feces
86887
86962
+
Asn
GTT
[ENA]
¢þ
>WENV170540133
CWGV01000011
[CWGV] human gut metagenome; ENVO:feces
97216
97301
+
Ser
TGA
[ENA]
¢þ
>WENV170540152
CWGV01000071
[CWGV] human gut metagenome; ENVO:feces
106547
106618
+
Gln
TTG
[ENA]
¢þ
>WENV170540153
CWGV01000071
[CWGV] human gut metagenome; ENVO:feces
109569
109644
+
Ala
GGC
[ENA]
¢þ
>WENV170540134
CWGV01000011
[CWGV] human gut metagenome; ENVO:feces
118566
118490
-
Pro
CGG
[ENA]
¢þ
>WENV170540145
CWGV01000047
[CWGV] human gut metagenome; ENVO:feces
124923
124998
+
Glu
CTC
[ENA]
¢þ
>WENV170540146
CWGV01000047
[CWGV] human gut metagenome; ENVO:feces
125035
125109
+
Gln
CTG
[ENA]
¢þ
>WENV170540156
CWGV01000071
[CWGV] human gut metagenome; ENVO:feces
126849
126773
-
Pro
TGG
[ENA]
¢þ
>WENV170540149
CWGV01000047
[CWGV] human gut metagenome; ENVO:feces
130119
130031
-
Ser
GGA
[ENA]
¢þ
>WENV170540155
CWGV01000071
[CWGV] human gut metagenome; ENVO:feces
134873
134799
-
Leu
CAA
[ENA]
¢þ
>WENV170540147
CWGV01000047
[CWGV] human gut metagenome; ENVO:feces
153549
153624
+
Lys
TTT
[ENA]
¢þ
>WENV170540148
CWGV01000047
[CWGV] human gut metagenome; ENVO:feces
176540
176614
+
Lys
CTT
[ENA]
¢þ
>WENV170540154
CWGV01000071
[CWGV] human gut metagenome; ENVO:feces
216211
216132
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK