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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWGW] human gut metagenome; ENVO:feces
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540188
CWGW01000028
[CWGW] human gut metagenome; ENVO:feces
6462
6538
+
Arg
TCT
[ENA]
¢þ
>WENV170540190
CWGW01000032
[CWGW] human gut metagenome; ENVO:feces
6521
6446
-
His
GTG
[ENA]
¢þ
>WENV170540198
CWGW01000034
[CWGW] human gut metagenome; ENVO:feces
9286
9362
+
Pro
CGG
[ENA]
¢þ
>WENV170540209
CWGW01000036
[CWGW] human gut metagenome; ENVO:feces
17788
17712
-
Met
CAT
[ENA]
¢þ
>WENV170540169
CWGW01000001
[CWGW] human gut metagenome; ENVO:feces
18243
18169
-
Thr
TGT
[ENA]
¢þ
>WENV170540178
CWGW01000019
[CWGW] human gut metagenome; ENVO:feces
19289
19363
+
Ile
GAT
[ENA]
¢þ
>WENV170540179
CWGW01000019
[CWGW] human gut metagenome; ENVO:feces
19405
19478
+
Ala
TGC
[ENA]
¢þ
>WENV170540170
CWGW01000003
[CWGW] human gut metagenome; ENVO:feces
21700
21625
-
Trp
CCA
[ENA]
¢þ
>WENV170540197
CWGW01000033
[CWGW] human gut metagenome; ENVO:feces
23242
23154
-
Leu
GAG
[ENA]
¢þ
>WENV170540204
CWGW01000034
[CWGW] human gut metagenome; ENVO:feces
29106
29019
-
Ser
TGA
[ENA]
¢þ
>WENV170540205
CWGW01000036
[CWGW] human gut metagenome; ENVO:feces
32620
32695
+
Arg
CCG
[ENA]
¢þ
>WENV170540214
CWGW01000037
[CWGW] human gut metagenome; ENVO:feces
41031
40957
-
Glu
TTC
[ENA]
¢þ
>WENV170540210
CWGW01000037
[CWGW] human gut metagenome; ENVO:feces
42282
42356
+
Asp
GTC
[ENA]
¢þ
>WENV170540203
CWGW01000034
[CWGW] human gut metagenome; ENVO:feces
55134
55047
-
Ser
CGA
[ENA]
¢þ
>WENV170540177
CWGW01000009
[CWGW] human gut metagenome; ENVO:feces
56050
55976
-
Lys
CTT
[ENA]
¢þ
>WENV170540206
CWGW01000036
[CWGW] human gut metagenome; ENVO:feces
62265
62338
+
Gly
TCC
[ENA]
¢þ
>WENV170540211
CWGW01000037
[CWGW] human gut metagenome; ENVO:feces
70594
70670
+
Asp
GTC
[ENA]
¢þ
>WENV170540189
CWGW01000032
[CWGW] human gut metagenome; ENVO:feces
72159
72233
+
Val
TAC
[ENA]
¢þ
>WENV170540212
CWGW01000037
[CWGW] human gut metagenome; ENVO:feces
76546
76620
+
Met
CAT
[ENA]
¢þ
>WENV170540176
CWGW01000009
[CWGW] human gut metagenome; ENVO:feces
79645
79570
-
Lys
TTT
[ENA]
¢þ
>WENV170540202
CWGW01000034
[CWGW] human gut metagenome; ENVO:feces
99177
99088
-
Ser
GCT
[ENA]
¢þ
>WENV170540171
CWGW01000009
[CWGW] human gut metagenome; ENVO:feces
103698
103786
+
Ser
GGA
[ENA]
¢þ
>WENV170540175
CWGW01000009
[CWGW] human gut metagenome; ENVO:feces
104668
104594
-
Gln
CTG
[ENA]
¢þ
>WENV170540174
CWGW01000009
[CWGW] human gut metagenome; ENVO:feces
104780
104705
-
Glu
CTC
[ENA]
¢þ
>WENV170540201
CWGW01000034
[CWGW] human gut metagenome; ENVO:feces
106373
106297
-
Met
CAT
[ENA]
¢þ
>WENV170540200
CWGW01000034
[CWGW] human gut metagenome; ENVO:feces
106532
106450
-
Tyr
GTA
[ENA]
¢þ
>WENV170540208
CWGW01000036
[CWGW] human gut metagenome; ENVO:feces
118618
118537
-
Leu
TAG
[ENA]
¢þ
>WENV170540207
CWGW01000036
[CWGW] human gut metagenome; ENVO:feces
118785
118710
-
Thr
CGT
[ENA]
¢þ
>WENV170540191
CWGW01000033
[CWGW] human gut metagenome; ENVO:feces
122439
122514
+
Gly
GCC
[ENA]
¢þ
>WENV170540192
CWGW01000033
[CWGW] human gut metagenome; ENVO:feces
122540
122611
+
Cys
GCA
[ENA]
¢þ
>WENV170540193
CWGW01000033
[CWGW] human gut metagenome; ENVO:feces
122651
122723
+
Val
GAC
[ENA]
¢þ
>WENV170540194
CWGW01000033
[CWGW] human gut metagenome; ENVO:feces
122771
122844
+
Val
CAC
[ENA]
¢þ
>WENV170540195
CWGW01000033
[CWGW] human gut metagenome; ENVO:feces
122875
122950
+
Gly
GCC
[ENA]
¢þ
>WENV170540213
CWGW01000037
[CWGW] human gut metagenome; ENVO:feces
124256
124329
+
Arg
CCT
[ENA]
¢þ
>WENV170540180
CWGW01000025
[CWGW] human gut metagenome; ENVO:feces
124466
124548
+
Leu
TAA
[ENA]
¢þ
>WENV170540196
CWGW01000033
[CWGW] human gut metagenome; ENVO:feces
139778
139852
+
Pro
GGG
[ENA]
¢þ
>WENV170540199
CWGW01000034
[CWGW] human gut metagenome; ENVO:feces
159058
158985
-
Gly
GCC
[ENA]
¢þ
>WENV170540181
CWGW01000025
[CWGW] human gut metagenome; ENVO:feces
159464
159538
+
Leu
CAA
[ENA]
¢þ
>WENV170540187
CWGW01000025
[CWGW] human gut metagenome; ENVO:feces
169609
169533
-
Pro
TGG
[ENA]
¢þ
>WENV170540186
CWGW01000025
[CWGW] human gut metagenome; ENVO:feces
176873
176800
-
Gln
TTG
[ENA]
¢þ
>WENV170540215
CWGW01000039
[CWGW] human gut metagenome; ENVO:feces
187055
186982
-
Asn
GTT
[ENA]
¢þ
>WENV170540182
CWGW01000025
[CWGW] human gut metagenome; ENVO:feces
187483
187558
+
Ala
GGC
[ENA]
¢þ
>WENV170540183
CWGW01000025
[CWGW] human gut metagenome; ENVO:feces
187642
187717
+
Ala
GGC
[ENA]
¢þ
>WENV170540184
CWGW01000025
[CWGW] human gut metagenome; ENVO:feces
207509
207583
+
Arg
ACG
[ENA]
¢þ
>WENV170540185
CWGW01000025
[CWGW] human gut metagenome; ENVO:feces
207612
207688
+
Arg
ACG
[ENA]
¢þ
>WENV170540173
CWGW01000009
[CWGW] human gut metagenome; ENVO:feces
231026
230953
-
Gly
CCC
[ENA]
¢þ
>WENV170540172
CWGW01000009
[CWGW] human gut metagenome; ENVO:feces
241158
241243
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK