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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[CWGX] human gut metagenome; ENVO:feces
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540237
CWGX01000031
[CWGX] human gut metagenome; ENVO:feces
212
288
+
Pro
TGG
[ENA]
¢þ
>WENV170540234
CWGX01000023
[CWGX] human gut metagenome; ENVO:feces
9265
9191
-
Leu
CAA
[ENA]
¢þ
>WENV170540247
CWGX01000038
[CWGX] human gut metagenome; ENVO:feces
9744
9669
-
Arg
CCG
[ENA]
¢þ
>WENV170540218
CWGX01000005
[CWGX] human gut metagenome; ENVO:feces
18984
19055
+
Gln
TTG
[ENA]
¢þ
>WENV170540220
CWGX01000007
[CWGX] human gut metagenome; ENVO:feces
19131
19205
+
Arg
TCT
[ENA]
¢þ
>WENV170540251
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
19307
19380
+
Lys
TTT
[ENA]
¢þ
>WENV170540216
CWGX01000002
[CWGX] human gut metagenome; ENVO:feces
19318
19395
+
Arg
CCT
[ENA]
¢þ
>WENV170540219
CWGX01000005
[CWGX] human gut metagenome; ENVO:feces
23966
23893
-
Ala
GGC
[ENA]
¢þ
>WENV170540242
CWGX01000036
[CWGX] human gut metagenome; ENVO:feces
26697
26773
+
Lys
CTT
[ENA]
¢þ
>WENV170540246
CWGX01000038
[CWGX] human gut metagenome; ENVO:feces
35209
35135
-
Gln
CTG
[ENA]
¢þ
>WENV170540245
CWGX01000038
[CWGX] human gut metagenome; ENVO:feces
35325
35250
-
Glu
CTC
[ENA]
¢þ
>WENV170540221
CWGX01000008
[CWGX] human gut metagenome; ENVO:feces
35499
35424
-
Asn
GTT
[ENA]
¢þ
>WENV170540238
CWGX01000035
[CWGX] human gut metagenome; ENVO:feces
39828
39903
+
Thr
CGT
[ENA]
¢þ
>WENV170540239
CWGX01000035
[CWGX] human gut metagenome; ENVO:feces
39961
40042
+
Leu
TAG
[ENA]
¢þ
>WENV170540222
CWGX01000009
[CWGX] human gut metagenome; ENVO:feces
41355
41430
+
Gly
GCC
[ENA]
¢þ
>WENV170540223
CWGX01000009
[CWGX] human gut metagenome; ENVO:feces
41457
41528
+
Cys
GCA
[ENA]
¢þ
>WENV170540224
CWGX01000009
[CWGX] human gut metagenome; ENVO:feces
41581
41655
+
Val
GAC
[ENA]
¢þ
>WENV170540233
CWGX01000023
[CWGX] human gut metagenome; ENVO:feces
47800
47717
-
Leu
TAA
[ENA]
¢þ
>WENV170540248
CWGX01000039
[CWGX] human gut metagenome; ENVO:feces
48462
48536
+
Ile
GAT
[ENA]
¢þ
>WENV170540249
CWGX01000039
[CWGX] human gut metagenome; ENVO:feces
48605
48678
+
Ala
TGC
[ENA]
¢þ
>WENV170540243
CWGX01000036
[CWGX] human gut metagenome; ENVO:feces
50564
50489
-
Trp
CCA
[ENA]
¢þ
>WENV170540236
CWGX01000025
[CWGX] human gut metagenome; ENVO:feces
51759
51674
-
Leu
CAG
[ENA]
¢þ
>WENV170540263
CWGX01000053
[CWGX] human gut metagenome; ENVO:feces
57720
57646
-
Met
CAT
[ENA]
¢þ
>WENV170540232
CWGX01000018
[CWGX] human gut metagenome; ENVO:feces
60769
60697
-
Trp
CCA
[ENA]
¢þ
>WENV170540235
CWGX01000025
[CWGX] human gut metagenome; ENVO:feces
62469
62542
+
Gly
CCC
[ENA]
¢þ
>WENV170540225
CWGX01000011
[CWGX] human gut metagenome; ENVO:feces
63235
63145
-
Leu
GAG
[ENA]
¢þ
>WENV170540217
CWGX01000004
[CWGX] human gut metagenome; ENVO:feces
63911
63836
-
His
GTG
[ENA]
¢þ
>WENV170540244
CWGX01000038
[CWGX] human gut metagenome; ENVO:feces
66868
66956
+
Ser
GGA
[ENA]
¢þ
>WENV170540262
CWGX01000053
[CWGX] human gut metagenome; ENVO:feces
83508
83434
-
Asp
GTC
[ENA]
¢þ
>WENV170540228
CWGX01000012
[CWGX] human gut metagenome; ENVO:feces
85284
85208
-
Pro
GGG
[ENA]
¢þ
>WENV170540259
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
88827
88751
-
Met
CAT
[ENA]
¢þ
>WENV170540241
CWGX01000035
[CWGX] human gut metagenome; ENVO:feces
95742
95669
-
Val
CAC
[ENA]
¢þ
>WENV170540240
CWGX01000035
[CWGX] human gut metagenome; ENVO:feces
95844
95772
-
Val
GAC
[ENA]
¢þ
>WENV170540250
CWGX01000039
[CWGX] human gut metagenome; ENVO:feces
96778
96704
-
Thr
TGT
[ENA]
¢þ
>WENV170540231
CWGX01000018
[CWGX] human gut metagenome; ENVO:feces
97204
97278
+
Val
TAC
[ENA]
¢þ
>WENV170540230
CWGX01000016
[CWGX] human gut metagenome; ENVO:feces
100491
100415
-
Arg
ACG
[ENA]
¢þ
>WENV170540229
CWGX01000016
[CWGX] human gut metagenome; ENVO:feces
100614
100538
-
Arg
ACG
[ENA]
¢þ
>WENV170540252
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
119130
119203
+
Gly
TCC
[ENA]
¢þ
>WENV170540261
CWGX01000053
[CWGX] human gut metagenome; ENVO:feces
119742
119668
-
Asp
GTC
[ENA]
¢þ
>WENV170540260
CWGX01000053
[CWGX] human gut metagenome; ENVO:feces
123074
123148
+
Glu
TTC
[ENA]
¢þ
>WENV170540227
CWGX01000012
[CWGX] human gut metagenome; ENVO:feces
164001
163926
-
Gly
GCC
[ENA]
¢þ
>WENV170540226
CWGX01000012
[CWGX] human gut metagenome; ENVO:feces
164100
164025
-
Val
CAC
[ENA]
¢þ
>WENV170540253
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
184672
184754
+
Tyr
GTA
[ENA]
¢þ
>WENV170540254
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
184831
184907
+
Met
CAT
[ENA]
¢þ
>WENV170540255
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
189816
189906
+
Ser
GCT
[ENA]
¢þ
>WENV170540256
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
231841
231928
+
Ser
CGA
[ENA]
¢þ
>WENV170540257
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
270891
270976
+
Ser
TGA
[ENA]
¢þ
>WENV170540258
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
294442
294366
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK