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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[CWGZ] human gut metagenome; ENVO:feces
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540330
CWGZ01000036
[CWGZ] human gut metagenome; ENVO:feces
39
114
+
Asp
GTC
[ENA]
¢þ
>WENV170540329
CWGZ01000035
[CWGZ] human gut metagenome; ENVO:feces
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV170540331
CWGZ01000036
[CWGZ] human gut metagenome; ENVO:feces
160
232
+
Phe
GAA
[ENA]
¢þ
>WENV170540328
CWGZ01000035
[CWGZ] human gut metagenome; ENVO:feces
175
90
-
Leu
TAA
[ENA]
¢þ
>WENV170540332
CWGZ01000036
[CWGZ] human gut metagenome; ENVO:feces
237
319
+
Tyr
GTA
[ENA]
¢þ
>WENV170540327
CWGZ01000035
[CWGZ] human gut metagenome; ENVO:feces
262
191
-
Gly
GCC
[ENA]
¢þ
>WENV170540333
CWGZ01000036
[CWGZ] human gut metagenome; ENVO:feces
323
396
+
Trp
CCA
[ENA]
¢þ
>WENV170540326
CWGZ01000035
[CWGZ] human gut metagenome; ENVO:feces
342
267
-
Thr
TGT
[ENA]
¢þ
>WENV170540325
CWGZ01000035
[CWGZ] human gut metagenome; ENVO:feces
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV170540334
CWGZ01000036
[CWGZ] human gut metagenome; ENVO:feces
433
506
+
His
GTG
[ENA]
¢þ
>WENV170540324
CWGZ01000035
[CWGZ] human gut metagenome; ENVO:feces
520
446
-
Lys
TTT
[ENA]
¢þ
>WENV170540337
CWGZ01000037
[CWGZ] human gut metagenome; ENVO:feces
572
644
+
Thr
GGT
[ENA]
¢þ
>WENV170540335
CWGZ01000036
[CWGZ] human gut metagenome; ENVO:feces
580
650
+
Cys
GCA
[ENA]
¢þ
>WENV170540336
CWGZ01000036
[CWGZ] human gut metagenome; ENVO:feces
663
748
+
Leu
CAA
[ENA]
¢þ
>WENV170540323
CWGZ01000032
[CWGZ] human gut metagenome; ENVO:feces
6992
6920
-
Thr
CGT
[ENA]
¢þ
>WENV170540322
CWGZ01000030
[CWGZ] human gut metagenome; ENVO:feces
20369
20442
+
Arg
CCG
[ENA]
¢þ
>WENV170540320
CWGZ01000025
[CWGZ] human gut metagenome; ENVO:feces
31134
31061
-
Pro
TGG
[ENA]
¢þ
>WENV170540321
CWGZ01000027
[CWGZ] human gut metagenome; ENVO:feces
34238
34327
+
Ser
CGA
[ENA]
¢þ
>WENV170540338
CWGZ01000040
[CWGZ] human gut metagenome; ENVO:feces
56714
56641
-
Lys
CTT
[ENA]
¢þ
>WENV170540344
CWGZ01000042
[CWGZ] human gut metagenome; ENVO:feces
88851
88778
-
Glu
TTC
[ENA]
¢þ
>WENV170540343
CWGZ01000042
[CWGZ] human gut metagenome; ENVO:feces
88954
88865
-
Ser
GCT
[ENA]
¢þ
>WENV170540342
CWGZ01000042
[CWGZ] human gut metagenome; ENVO:feces
89037
88964
-
Ile
GAT
[ENA]
¢þ
>WENV170540341
CWGZ01000042
[CWGZ] human gut metagenome; ENVO:feces
89121
89051
-
Gly
TCC
[ENA]
¢þ
>WENV170540340
CWGZ01000042
[CWGZ] human gut metagenome; ENVO:feces
89209
89132
-
Phe
GAA
[ENA]
¢þ
>WENV170540339
CWGZ01000042
[CWGZ] human gut metagenome; ENVO:feces
89288
89213
-
Asp
GTC
[ENA]
¢þ
>WENV170540316
CWGZ01000009
[CWGZ] human gut metagenome; ENVO:feces
132289
132214
-
Arg
TCT
[ENA]
¢þ
>WENV170540315
CWGZ01000009
[CWGZ] human gut metagenome; ENVO:feces
183047
183122
+
Arg
CCT
[ENA]
¢þ
>WENV170540317
CWGZ01000021
[CWGZ] human gut metagenome; ENVO:feces
207050
207137
+
Leu
GAG
[ENA]
¢þ
>WENV170540318
CWGZ01000021
[CWGZ] human gut metagenome; ENVO:feces
218383
218465
+
Tyr
GTA
[ENA]
¢þ
>WENV170540319
CWGZ01000021
[CWGZ] human gut metagenome; ENVO:feces
218473
218546
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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