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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[CWHB] human gut metagenome; ENVO:feces
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540406
CWHB01000001
[CWHB] human gut metagenome; ENVO:feces
103
30
-
Ala
TGC
[ENA]
¢þ
>WENV170540405
CWHB01000001
[CWHB] human gut metagenome; ENVO:feces
216
142
-
Ile
GAT
[ENA]
¢þ
>WENV170540439
CWHB01000024
[CWHB] human gut metagenome; ENVO:feces
797
884
+
Ser
GGA
[ENA]
¢þ
>WENV170540436
CWHB01000017
[CWHB] human gut metagenome; ENVO:feces
6841
6766
-
Ala
GGC
[ENA]
¢þ
>WENV170540415
CWHB01000010
[CWHB] human gut metagenome; ENVO:feces
14001
14076
+
His
GTG
[ENA]
¢þ
>WENV170540449
CWHB01000028
[CWHB] human gut metagenome; ENVO:feces
20284
20208
-
Val
TAC
[ENA]
¢þ
>WENV170540448
CWHB01000027
[CWHB] human gut metagenome; ENVO:feces
24544
24471
-
Arg
CCT
[ENA]
¢þ
>WENV170540434
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
31585
31511
-
Met
CAT
[ENA]
¢þ
>WENV170540447
CWHB01000026
[CWHB] human gut metagenome; ENVO:feces
37101
37029
-
Val
GAC
[ENA]
¢þ
>WENV170540446
CWHB01000026
[CWHB] human gut metagenome; ENVO:feces
37211
37140
-
Cys
GCA
[ENA]
¢þ
>WENV170540445
CWHB01000026
[CWHB] human gut metagenome; ENVO:feces
37314
37239
-
Gly
GCC
[ENA]
¢þ
>WENV170540407
CWHB01000003
[CWHB] human gut metagenome; ENVO:feces
38406
38330
-
Thr
TGT
[ENA]
¢þ
>WENV170540404
CWHB01000001
[CWHB] human gut metagenome; ENVO:feces
41776
41691
-
Leu
CAG
[ENA]
¢þ
>WENV170540440
CWHB01000024
[CWHB] human gut metagenome; ENVO:feces
43577
43651
+
Lys
CTT
[ENA]
¢þ
>WENV170540443
CWHB01000026
[CWHB] human gut metagenome; ENVO:feces
45377
45453
+
Pro
GGG
[ENA]
¢þ
>WENV170540403
CWHB01000001
[CWHB] human gut metagenome; ENVO:feces
55040
55113
+
Gly
CCC
[ENA]
¢þ
>WENV170540435
CWHB01000012
[CWHB] human gut metagenome; ENVO:feces
64187
64260
+
Lys
TTT
[ENA]
¢þ
>WENV170540416
CWHB01000010
[CWHB] human gut metagenome; ENVO:feces
66411
66484
+
Val
CAC
[ENA]
¢þ
>WENV170540417
CWHB01000010
[CWHB] human gut metagenome; ENVO:feces
66517
66592
+
Gly
GCC
[ENA]
¢þ
>WENV170540418
CWHB01000010
[CWHB] human gut metagenome; ENVO:feces
69052
68976
-
Arg
TCT
[ENA]
¢þ
>WENV170540408
CWHB01000007
[CWHB] human gut metagenome; ENVO:feces
69512
69586
+
Arg
ACG
[ENA]
¢þ
>WENV170540409
CWHB01000007
[CWHB] human gut metagenome; ENVO:feces
69630
69704
+
Arg
ACG
[ENA]
¢þ
>WENV170540438
CWHB01000023
[CWHB] human gut metagenome; ENVO:feces
80298
80223
-
Gly
GCC
[ENA]
¢þ
>WENV170540444
CWHB01000026
[CWHB] human gut metagenome; ENVO:feces
84092
84163
+
Gln
TTG
[ENA]
¢þ
>WENV170540442
CWHB01000024
[CWHB] human gut metagenome; ENVO:feces
89065
88989
-
Met
CAT
[ENA]
¢þ
>WENV170540437
CWHB01000023
[CWHB] human gut metagenome; ENVO:feces
103075
103000
-
Asn
GTT
[ENA]
¢þ
>WENV170540441
CWHB01000024
[CWHB] human gut metagenome; ENVO:feces
104090
104165
+
Arg
CCG
[ENA]
¢þ
>WENV170540433
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
106338
106264
-
Asp
GTC
[ENA]
¢þ
>WENV170540432
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
106435
106363
-
Glu
TTC
[ENA]
¢þ
>WENV170540419
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
108924
108998
+
Asp
GTC
[ENA]
¢þ
>WENV170540420
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
124857
124933
+
Pro
CGG
[ENA]
¢þ
>WENV170540431
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
139458
139371
-
Ser
TGA
[ENA]
¢þ
>WENV170540410
CWHB01000007
[CWHB] human gut metagenome; ENVO:feces
149775
149857
+
Leu
TAA
[ENA]
¢þ
>WENV170540421
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
161451
161539
+
Ser
CGA
[ENA]
¢þ
>WENV170540411
CWHB01000007
[CWHB] human gut metagenome; ENVO:feces
186625
186701
+
Leu
CAA
[ENA]
¢þ
>WENV170540422
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
198684
198774
+
Ser
GCT
[ENA]
¢þ
>WENV170540412
CWHB01000007
[CWHB] human gut metagenome; ENVO:feces
205299
205375
+
Pro
TGG
[ENA]
¢þ
>WENV170540430
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
211015
210939
-
Met
CAT
[ENA]
¢þ
>WENV170540429
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
211175
211093
-
Tyr
GTA
[ENA]
¢þ
>WENV170540414
CWHB01000007
[CWHB] human gut metagenome; ENVO:feces
250072
249983
-
Leu
GAG
[ENA]
¢þ
>WENV170540428
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
251371
251298
-
Gly
TCC
[ENA]
¢þ
>WENV170540427
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
274863
274788
-
Trp
CCA
[ENA]
¢þ
>WENV170540426
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
294287
294206
-
Leu
TAG
[ENA]
¢þ
>WENV170540425
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
294430
294355
-
Thr
CGT
[ENA]
¢þ
>WENV170540413
CWHB01000007
[CWHB] human gut metagenome; ENVO:feces
333572
333647
+
Asn
GTT
[ENA]
¢þ
>WENV170540424
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
363418
363344
-
Gln
CTG
[ENA]
¢þ
>WENV170540423
CWHB01000011
[CWHB] human gut metagenome; ENVO:feces
363529
363454
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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