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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWHC] human gut metagenome; ENVO:feces
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540486
CWHC01000078
[CWHC] human gut metagenome; ENVO:feces
92
175
+
Leu
TAG
[ENA]
¢þ
>WENV170540498
CWHC01000101
[CWHC] human gut metagenome; ENVO:feces
376
301
-
Met
CAT
[ENA]
¢þ
>WENV170540451
CWHC01000002
[CWHC] human gut metagenome; ENVO:feces
583
508
-
Lys
TTT
[ENA]
¢þ
>WENV170540485
CWHC01000075
[CWHC] human gut metagenome; ENVO:feces
1738
1824
+
Leu
CAA
[ENA]
¢þ
>WENV170540464
CWHC01000030
[CWHC] human gut metagenome; ENVO:feces
2047
1971
-
Met
CAT
[ENA]
¢þ
>WENV170540454
CWHC01000021
[CWHC] human gut metagenome; ENVO:feces
2147
2073
-
Val
CAC
[ENA]
¢þ
>WENV170540460
CWHC01000025
[CWHC] human gut metagenome; ENVO:feces
2485
2574
+
Ser
TGA
[ENA]
¢þ
>WENV170540465
CWHC01000033
[CWHC] human gut metagenome; ENVO:feces
6675
6601
-
Gln
TTG
[ENA]
¢þ
>WENV170540501
CWHC01000108
[CWHC] human gut metagenome; ENVO:feces
9117
9192
+
Thr
CGT
[ENA]
¢þ
>WENV170540450
CWHC01000002
[CWHC] human gut metagenome; ENVO:feces
9462
9388
-
Gly
CCC
[ENA]
¢þ
>WENV170540455
CWHC01000024
[CWHC] human gut metagenome; ENVO:feces
10325
10415
+
Ser
GGA
[ENA]
¢þ
>WENV170540456
CWHC01000024
[CWHC] human gut metagenome; ENVO:feces
10464
10554
+
Ser
CGA
[ENA]
¢þ
>WENV170540469
CWHC01000036
[CWHC] human gut metagenome; ENVO:feces
11223
11147
-
Glu
CTC
[ENA]
¢þ
>WENV170540490
CWHC01000093
[CWHC] human gut metagenome; ENVO:feces
12007
12080
+
Gln
CTG
[ENA]
¢þ
>WENV170540491
CWHC01000093
[CWHC] human gut metagenome; ENVO:feces
12097
12175
+
Glu
CTC
[ENA]
¢þ
>WENV170540497
CWHC01000096
[CWHC] human gut metagenome; ENVO:feces
12359
12269
-
Ser
GCT
[ENA]
¢þ
>WENV170540476
CWHC01000046
[CWHC] human gut metagenome; ENVO:feces
14194
14119
-
Val
TAC
[ENA]
¢þ
>WENV170540463
CWHC01000026
[CWHC] human gut metagenome; ENVO:feces
14330
14256
-
Val
GAC
[ENA]
¢þ
>WENV170540459
CWHC01000024
[CWHC] human gut metagenome; ENVO:feces
16500
16424
-
Ile
GAT
[ENA]
¢þ
>WENV170540458
CWHC01000024
[CWHC] human gut metagenome; ENVO:feces
16580
16505
-
Ala
TGC
[ENA]
¢þ
>WENV170540457
CWHC01000024
[CWHC] human gut metagenome; ENVO:feces
16724
16648
-
Ile
GAT
[ENA]
¢þ
>WENV170540496
CWHC01000096
[CWHC] human gut metagenome; ENVO:feces
16860
16784
-
Arg
ACG
[ENA]
¢þ
>WENV170540489
CWHC01000089
[CWHC] human gut metagenome; ENVO:feces
22593
22517
-
Glu
TTC
[ENA]
¢þ
>WENV170540470
CWHC01000046
[CWHC] human gut metagenome; ENVO:feces
23465
23541
+
Pro
CGG
[ENA]
¢þ
>WENV170540477
CWHC01000048
[CWHC] human gut metagenome; ENVO:feces
28253
28329
+
Arg
CCG
[ENA]
¢þ
>WENV170540487
CWHC01000081
[CWHC] human gut metagenome; ENVO:feces
28974
28897
-
Asp
GTC
[ENA]
¢þ
>WENV170540488
CWHC01000087
[CWHC] human gut metagenome; ENVO:feces
29253
29169
-
Leu
TAA
[ENA]
¢þ
>WENV170540500
CWHC01000104
[CWHC] human gut metagenome; ENVO:feces
34056
33983
-
Gly
TCC
[ENA]
¢þ
>WENV170540499
CWHC01000104
[CWHC] human gut metagenome; ENVO:feces
34139
34063
-
Pro
TGG
[ENA]
¢þ
>WENV170540452
CWHC01000020
[CWHC] human gut metagenome; ENVO:feces
35375
35299
-
Pro
GGG
[ENA]
¢þ
>WENV170540453
CWHC01000021
[CWHC] human gut metagenome; ENVO:feces
36044
35969
-
Ala
GGC
[ENA]
¢þ
>WENV170540471
CWHC01000046
[CWHC] human gut metagenome; ENVO:feces
50170
50244
+
Thr
TGT
[ENA]
¢þ
>WENV170540472
CWHC01000046
[CWHC] human gut metagenome; ENVO:feces
54028
54113
+
Tyr
GTA
[ENA]
¢þ
>WENV170540473
CWHC01000046
[CWHC] human gut metagenome; ENVO:feces
54121
54196
+
Thr
GGT
[ENA]
¢þ
>WENV170540474
CWHC01000046
[CWHC] human gut metagenome; ENVO:feces
54200
54276
+
Met
CAT
[ENA]
¢þ
>WENV170540492
CWHC01000095
[CWHC] human gut metagenome; ENVO:feces
55228
55304
+
Ala
CGC
[ENA]
¢þ
>WENV170540475
CWHC01000046
[CWHC] human gut metagenome; ENVO:feces
56006
56081
+
Trp
CCA
[ENA]
¢þ
>WENV170540461
CWHC01000026
[CWHC] human gut metagenome; ENVO:feces
56380
56455
+
Phe
GAA
[ENA]
¢þ
>WENV170540462
CWHC01000026
[CWHC] human gut metagenome; ENVO:feces
62595
62681
+
Leu
CAG
[ENA]
¢þ
>WENV170540468
CWHC01000036
[CWHC] human gut metagenome; ENVO:feces
72739
72665
-
Asn
GTT
[ENA]
¢þ
>WENV170540467
CWHC01000036
[CWHC] human gut metagenome; ENVO:feces
72848
72774
-
Asn
GTT
[ENA]
¢þ
>WENV170540493
CWHC01000095
[CWHC] human gut metagenome; ENVO:feces
73423
73499
+
His
GTG
[ENA]
¢þ
>WENV170540494
CWHC01000095
[CWHC] human gut metagenome; ENVO:feces
73522
73597
+
Lys
CTT
[ENA]
¢þ
>WENV170540495
CWHC01000095
[CWHC] human gut metagenome; ENVO:feces
73643
73720
+
Lys
CTT
[ENA]
¢þ
>WENV170540484
CWHC01000053
[CWHC] human gut metagenome; ENVO:feces
97509
97584
+
Arg
CCT
[ENA]
¢þ
>WENV170540483
CWHC01000050
[CWHC] human gut metagenome; ENVO:feces
102187
102113
-
Val
GAC
[ENA]
¢þ
>WENV170540482
CWHC01000050
[CWHC] human gut metagenome; ENVO:feces
102266
102191
-
Gly
GCC
[ENA]
¢þ
>WENV170540481
CWHC01000050
[CWHC] human gut metagenome; ENVO:feces
102816
102741
-
Gly
GCC
[ENA]
¢þ
>WENV170540466
CWHC01000036
[CWHC] human gut metagenome; ENVO:feces
102829
102753
-
Arg
TCT
[ENA]
¢þ
>WENV170540480
CWHC01000050
[CWHC] human gut metagenome; ENVO:feces
102932
102859
-
Cys
GCA
[ENA]
¢þ
>WENV170540479
CWHC01000050
[CWHC] human gut metagenome; ENVO:feces
103043
102968
-
Gly
GCC
[ENA]
¢þ
>WENV170540478
CWHC01000050
[CWHC] human gut metagenome; ENVO:feces
106471
106382
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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