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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWHD] human gut metagenome; ENVO:feces
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540518
CWHD01000058
[CWHD] human gut metagenome; ENVO:feces
412
325
-
Ser
CGA
[ENA]
¢þ
>WENV170540548
CWHD01000098
[CWHD] human gut metagenome; ENVO:feces
1058
985
-
Gly
TCC
[ENA]
¢þ
>WENV170540523
CWHD01000066
[CWHD] human gut metagenome; ENVO:feces
3421
3346
-
Val
CAC
[ENA]
¢þ
>WENV170540522
CWHD01000066
[CWHD] human gut metagenome; ENVO:feces
3541
3469
-
Val
GAC
[ENA]
¢þ
>WENV170540521
CWHD01000066
[CWHD] human gut metagenome; ENVO:feces
3660
3587
-
Gly
GCC
[ENA]
¢þ
>WENV170540507
CWHD01000008
[CWHD] human gut metagenome; ENVO:feces
5381
5456
+
His
GTG
[ENA]
¢þ
>WENV170540502
CWHD01000005
[CWHD] human gut metagenome; ENVO:feces
8071
8146
+
Glu
CTC
[ENA]
¢þ
>WENV170540503
CWHD01000005
[CWHD] human gut metagenome; ENVO:feces
8183
8257
+
Gln
CTG
[ENA]
¢þ
>WENV170540549
CWHD01000105
[CWHD] human gut metagenome; ENVO:feces
11076
11151
+
Trp
CCA
[ENA]
¢þ
>WENV170540506
CWHD01000005
[CWHD] human gut metagenome; ENVO:feces
11898
11810
-
Ser
GGA
[ENA]
¢þ
>WENV170540536
CWHD01000080
[CWHD] human gut metagenome; ENVO:feces
12341
12417
+
Pro
CGG
[ENA]
¢þ
>WENV170540512
CWHD01000035
[CWHD] human gut metagenome; ENVO:feces
15547
15473
-
Val
TAC
[ENA]
¢þ
>WENV170540509
CWHD01000025
[CWHD] human gut metagenome; ENVO:feces
15574
15498
-
Pro
GGG
[ENA]
¢þ
>WENV170540511
CWHD01000034
[CWHD] human gut metagenome; ENVO:feces
19112
19027
-
Leu
CAG
[ENA]
¢þ
>WENV170540542
CWHD01000081
[CWHD] human gut metagenome; ENVO:feces
19264
19191
-
Asn
GTT
[ENA]
¢þ
>WENV170540520
CWHD01000066
[CWHD] human gut metagenome; ENVO:feces
20664
20589
-
Arg
CCG
[ENA]
¢þ
>WENV170540510
CWHD01000028
[CWHD] human gut metagenome; ENVO:feces
21569
21642
+
Gly
CCC
[ENA]
¢þ
>WENV170540524
CWHD01000071
[CWHD] human gut metagenome; ENVO:feces
30481
30554
+
Asn
GTT
[ENA]
¢þ
>WENV170540504
CWHD01000005
[CWHD] human gut metagenome; ENVO:feces
35155
35230
+
Lys
TTT
[ENA]
¢þ
>WENV170540519
CWHD01000066
[CWHD] human gut metagenome; ENVO:feces
36295
36369
+
Met
CAT
[ENA]
¢þ
>WENV170540537
CWHD01000080
[CWHD] human gut metagenome; ENVO:feces
37226
37139
-
Ser
TGA
[ENA]
¢þ
>WENV170540517
CWHD01000058
[CWHD] human gut metagenome; ENVO:feces
37472
37385
-
Ser
GCT
[ENA]
¢þ
>WENV170540516
CWHD01000058
[CWHD] human gut metagenome; ENVO:feces
44346
44270
-
Met
CAT
[ENA]
¢þ
>WENV170540515
CWHD01000058
[CWHD] human gut metagenome; ENVO:feces
44505
44423
-
Tyr
GTA
[ENA]
¢þ
>WENV170540508
CWHD01000009
[CWHD] human gut metagenome; ENVO:feces
45599
45523
-
Arg
TCT
[ENA]
¢þ
>WENV170540514
CWHD01000047
[CWHD] human gut metagenome; ENVO:feces
46199
46125
-
Thr
TGT
[ENA]
¢þ
>WENV170540513
CWHD01000046
[CWHD] human gut metagenome; ENVO:feces
47542
47616
+
Ile
GAT
[ENA]
¢þ
>WENV170540505
CWHD01000005
[CWHD] human gut metagenome; ENVO:feces
57719
57793
+
Lys
CTT
[ENA]
¢þ
>WENV170540535
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
78386
78313
-
Thr
CGT
[ENA]
¢þ
>WENV170540547
CWHD01000082
[CWHD] human gut metagenome; ENVO:feces
79300
79226
-
Glu
TTC
[ENA]
¢þ
>WENV170540543
CWHD01000082
[CWHD] human gut metagenome; ENVO:feces
81865
81939
+
Asp
GTC
[ENA]
¢þ
>WENV170540534
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
83931
83848
-
Leu
TAG
[ENA]
¢þ
>WENV170540533
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
84091
84018
-
Thr
CGT
[ENA]
¢þ
>WENV170540538
CWHD01000081
[CWHD] human gut metagenome; ENVO:feces
86216
86291
+
Gly
GCC
[ENA]
¢þ
>WENV170540539
CWHD01000081
[CWHD] human gut metagenome; ENVO:feces
86316
86387
+
Cys
GCA
[ENA]
¢þ
>WENV170540540
CWHD01000081
[CWHD] human gut metagenome; ENVO:feces
86508
86581
+
Val
CAC
[ENA]
¢þ
>WENV170540541
CWHD01000081
[CWHD] human gut metagenome; ENVO:feces
86612
86687
+
Gly
GCC
[ENA]
¢þ
>WENV170540544
CWHD01000082
[CWHD] human gut metagenome; ENVO:feces
115693
115769
+
Asp
GTC
[ENA]
¢þ
>WENV170540545
CWHD01000082
[CWHD] human gut metagenome; ENVO:feces
123342
123416
+
Met
CAT
[ENA]
¢þ
>WENV170540546
CWHD01000082
[CWHD] human gut metagenome; ENVO:feces
163360
163433
+
Arg
CCT
[ENA]
¢þ
>WENV170540525
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
222285
222373
+
Leu
GAG
[ENA]
¢þ
>WENV170540532
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
334425
334351
-
Arg
ACG
[ENA]
¢þ
>WENV170540526
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
366317
366388
+
Gln
TTG
[ENA]
¢þ
>WENV170540527
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
369329
369404
+
Ala
GGC
[ENA]
¢þ
>WENV170540528
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
369491
369566
+
Ala
GGC
[ENA]
¢þ
>WENV170540529
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
376207
376283
+
Pro
TGG
[ENA]
¢þ
>WENV170540531
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
384468
384394
-
Leu
CAA
[ENA]
¢þ
>WENV170540530
CWHD01000073
[CWHD] human gut metagenome; ENVO:feces
424165
424084
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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