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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[CWHE] human gut metagenome; ENVO:feces
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540571
CWHE01000180
[CWHE] human gut metagenome; ENVO:feces
43
116
+
Arg
ACG
[ENA]
¢þ
>WENV170540579
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
60
135
+
Phe
GAA
[ENA]
¢þ
>WENV170540572
CWHE01000180
[CWHE] human gut metagenome; ENVO:feces
119
194
+
Pro
TGG
[ENA]
¢þ
>WENV170540580
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
136
218
+
Tyr
GTA
[ENA]
¢þ
>WENV170540573
CWHE01000180
[CWHE] human gut metagenome; ENVO:feces
208
282
+
Ala
TGC
[ENA]
¢þ
>WENV170540581
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
225
297
+
Trp
CCA
[ENA]
¢þ
>WENV170540574
CWHE01000180
[CWHE] human gut metagenome; ENVO:feces
296
369
+
Met
CAT
[ENA]
¢þ
>WENV170540582
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
314
387
+
His
GTG
[ENA]
¢þ
>WENV170540575
CWHE01000180
[CWHE] human gut metagenome; ENVO:feces
384
457
+
Met
CAT
[ENA]
¢þ
>WENV170540583
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
397
470
+
Gln
TTG
[ENA]
¢þ
>WENV170540556
CWHE01000043
[CWHE] human gut metagenome; ENVO:feces
450
378
-
Trp
CCA
[ENA]
¢þ
>WENV170540584
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
539
609
+
Cys
GCA
[ENA]
¢þ
>WENV170540585
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
633
718
+
Leu
CAA
[ENA]
¢þ
>WENV170540586
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
777
852
+
His
GTG
[ENA]
¢þ
>WENV170540553
CWHE01000032
[CWHE] human gut metagenome; ENVO:feces
3720
3795
+
Arg
CCT
[ENA]
¢þ
>WENV170540559
CWHE01000105
[CWHE] human gut metagenome; ENVO:feces
3991
3914
-
Arg
TCT
[ENA]
¢þ
>WENV170540570
CWHE01000179
[CWHE] human gut metagenome; ENVO:feces
4714
4641
-
Glu
TTC
[ENA]
¢þ
>WENV170540569
CWHE01000179
[CWHE] human gut metagenome; ENVO:feces
4815
4726
-
Ser
GCT
[ENA]
¢þ
>WENV170540568
CWHE01000179
[CWHE] human gut metagenome; ENVO:feces
4909
4836
-
Ile
GAT
[ENA]
¢þ
>WENV170540567
CWHE01000179
[CWHE] human gut metagenome; ENVO:feces
4994
4924
-
Gly
TCC
[ENA]
¢þ
>WENV170540566
CWHE01000179
[CWHE] human gut metagenome; ENVO:feces
5076
5000
-
Phe
GAA
[ENA]
¢þ
>WENV170540565
CWHE01000140
[CWHE] human gut metagenome; ENVO:feces
5646
5569
-
Pro
TGG
[ENA]
¢þ
>WENV170540564
CWHE01000140
[CWHE] human gut metagenome; ENVO:feces
5736
5661
-
Arg
ACG
[ENA]
¢þ
>WENV170540576
CWHE01000183
[CWHE] human gut metagenome; ENVO:feces
9204
9287
+
Tyr
GTA
[ENA]
¢þ
>WENV170540577
CWHE01000183
[CWHE] human gut metagenome; ENVO:feces
9288
9361
+
Gln
TTG
[ENA]
¢þ
>WENV170540555
CWHE01000043
[CWHE] human gut metagenome; ENVO:feces
11270
11200
-
Gly
CCC
[ENA]
¢þ
>WENV170540558
CWHE01000075
[CWHE] human gut metagenome; ENVO:feces
18109
18036
-
Thr
GGT
[ENA]
¢þ
>WENV170540557
CWHE01000075
[CWHE] human gut metagenome; ENVO:feces
19505
19580
+
Asn
GTT
[ENA]
¢þ
>WENV170540552
CWHE01000030
[CWHE] human gut metagenome; ENVO:feces
20119
20034
-
Leu
CAG
[ENA]
¢þ
>WENV170540554
CWHE01000034
[CWHE] human gut metagenome; ENVO:feces
25124
25197
+
Arg
CCG
[ENA]
¢þ
>WENV170540551
CWHE01000001
[CWHE] human gut metagenome; ENVO:feces
39207
39133
-
Lys
CTT
[ENA]
¢þ
>WENV170540587
CWHE01000192
[CWHE] human gut metagenome; ENVO:feces
41997
42093
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170540563
CWHE01000120
[CWHE] human gut metagenome; ENVO:feces
46841
46928
+
Ser
CGA
[ENA]
¢þ
>WENV170540560
CWHE01000107
[CWHE] human gut metagenome; ENVO:feces
48427
48352
-
Met
CAT
[ENA]
¢þ
>WENV170540561
CWHE01000114
[CWHE] human gut metagenome; ENVO:feces
70151
70234
+
Leu
AAG
[ENA]
¢þ
>WENV170540550
CWHE01000001
[CWHE] human gut metagenome; ENVO:feces
80915
80987
+
Thr
CGT
[ENA]
¢þ
>WENV170540578
CWHE01000183
[CWHE] human gut metagenome; ENVO:feces
100730
100804
+
Glu
CTC
[ENA]
¢þ
>WENV170540562
CWHE01000114
[CWHE] human gut metagenome; ENVO:feces
168027
167953
-
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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