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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWHF] human gut metagenome; ENVO:feces
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540596
CWHF01000037
[CWHF] human gut metagenome; ENVO:feces
44
118
+
Gln
CTG
[ENA]
¢þ
>WENV170540590
CWHF01000009
[CWHF] human gut metagenome; ENVO:feces
76
152
+
Pro
TGG
[ENA]
¢þ
>WENV170540591
CWHF01000031
[CWHF] human gut metagenome; ENVO:feces
78
153
+
Trp
CCA
[ENA]
¢þ
>WENV170540597
CWHF01000045
[CWHF] human gut metagenome; ENVO:feces
89
13
-
Pro
CGG
[ENA]
¢þ
>WENV170540602
CWHF01000065
[CWHF] human gut metagenome; ENVO:feces
97
21
-
Met
CAT
[ENA]
¢þ
>WENV170540613
CWHF01000104
[CWHF] human gut metagenome; ENVO:feces
128
53
-
His
GTG
[ENA]
¢þ
>WENV170540601
CWHF01000065
[CWHF] human gut metagenome; ENVO:feces
208
132
-
Met
CAT
[ENA]
¢þ
>WENV170540612
CWHF01000104
[CWHF] human gut metagenome; ENVO:feces
260
184
-
Arg
CCG
[ENA]
¢þ
>WENV170540589
CWHF01000003
[CWHF] human gut metagenome; ENVO:feces
1922
1836
-
Leu
GAG
[ENA]
¢þ
>WENV170540614
CWHF01000122
[CWHF] human gut metagenome; ENVO:feces
3554
3629
+
Thr
TGT
[ENA]
¢þ
>WENV170540628
CWHF01000165
[CWHF] human gut metagenome; ENVO:feces
7539
7452
-
Ser
GGA
[ENA]
¢þ
>WENV170540603
CWHF01000086
[CWHF] human gut metagenome; ENVO:feces
9230
9136
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170540598
CWHF01000047
[CWHF] human gut metagenome; ENVO:feces
17317
17403
+
Leu
CAG
[ENA]
¢þ
>WENV170540599
CWHF01000047
[CWHF] human gut metagenome; ENVO:feces
17432
17518
+
Leu
CAG
[ENA]
¢þ
>WENV170540588
CWHF01000002
[CWHF] human gut metagenome; ENVO:feces
18442
18526
+
Leu
CAA
[ENA]
¢þ
>WENV170540600
CWHF01000058
[CWHF] human gut metagenome; ENVO:feces
18885
18972
+
Ser
TGA
[ENA]
¢þ
>WENV170540623
CWHF01000157
[CWHF] human gut metagenome; ENVO:feces
19332
19408
+
Asp
GTC
[ENA]
¢þ
>WENV170540631
CWHF01000173
[CWHF] human gut metagenome; ENVO:feces
51363
51288
-
Met
CAT
[ENA]
¢þ
>WENV170540592
CWHF01000034
[CWHF] human gut metagenome; ENVO:feces
58549
58476
-
Gly
CCC
[ENA]
¢þ
>WENV170540630
CWHF01000171
[CWHF] human gut metagenome; ENVO:feces
66801
66877
+
Arg
TCT
[ENA]
¢þ
>WENV170540593
CWHF01000036
[CWHF] human gut metagenome; ENVO:feces
71918
71992
+
Gln
TTG
[ENA]
¢þ
>WENV170540594
CWHF01000036
[CWHF] human gut metagenome; ENVO:feces
72014
72090
+
Met
CAT
[ENA]
¢þ
>WENV170540595
CWHF01000036
[CWHF] human gut metagenome; ENVO:feces
72099
72183
+
Leu
TAG
[ENA]
¢þ
>WENV170540627
CWHF01000164
[CWHF] human gut metagenome; ENVO:feces
86763
86687
-
Val
GAC
[ENA]
¢þ
>WENV170540624
CWHF01000157
[CWHF] human gut metagenome; ENVO:feces
96874
96799
-
Thr
CGT
[ENA]
¢þ
>WENV170540615
CWHF01000142
[CWHF] human gut metagenome; ENVO:feces
100989
101065
+
Pro
GGG
[ENA]
¢þ
>WENV170540611
CWHF01000097
[CWHF] human gut metagenome; ENVO:feces
101771
101685
-
Leu
TAA
[ENA]
¢þ
>WENV170540610
CWHF01000097
[CWHF] human gut metagenome; ENVO:feces
101858
101785
-
Cys
GCA
[ENA]
¢þ
>WENV170540609
CWHF01000097
[CWHF] human gut metagenome; ENVO:feces
101972
101897
-
Gly
GCC
[ENA]
¢þ
>WENV170540625
CWHF01000159
[CWHF] human gut metagenome; ENVO:feces
113752
113844
+
Ser
GCT
[ENA]
¢þ
>WENV170540626
CWHF01000159
[CWHF] human gut metagenome; ENVO:feces
113849
113925
+
Arg
ACG
[ENA]
¢þ
>WENV170540608
CWHF01000097
[CWHF] human gut metagenome; ENVO:feces
123441
123352
-
Ser
CGA
[ENA]
¢þ
>WENV170540604
CWHF01000097
[CWHF] human gut metagenome; ENVO:feces
124430
124505
+
Asn
GTT
[ENA]
¢þ
>WENV170540607
CWHF01000097
[CWHF] human gut metagenome; ENVO:feces
142592
142517
-
Asn
GTT
[ENA]
¢þ
>WENV170540616
CWHF01000152
[CWHF] human gut metagenome; ENVO:feces
143701
143774
+
Arg
CCT
[ENA]
¢þ
>WENV170540605
CWHF01000097
[CWHF] human gut metagenome; ENVO:feces
144368
144443
+
Asn
GTT
[ENA]
¢þ
>WENV170540622
CWHF01000152
[CWHF] human gut metagenome; ENVO:feces
163270
163195
-
Ala
GGC
[ENA]
¢þ
>WENV170540621
CWHF01000152
[CWHF] human gut metagenome; ENVO:feces
163387
163312
-
Ala
GGC
[ENA]
¢þ
>WENV170540617
CWHF01000152
[CWHF] human gut metagenome; ENVO:feces
166095
166170
+
Val
TAC
[ENA]
¢þ
>WENV170540618
CWHF01000152
[CWHF] human gut metagenome; ENVO:feces
166215
166290
+
Val
TAC
[ENA]
¢þ
>WENV170540619
CWHF01000152
[CWHF] human gut metagenome; ENVO:feces
166339
166414
+
Val
TAC
[ENA]
¢þ
>WENV170540620
CWHF01000152
[CWHF] human gut metagenome; ENVO:feces
166418
166493
+
Lys
TTT
[ENA]
¢þ
>WENV170540606
CWHF01000097
[CWHF] human gut metagenome; ENVO:feces
168295
168370
+
Asn
GTT
[ENA]
¢þ
>WENV170540629
CWHF01000168
[CWHF] human gut metagenome; ENVO:feces
257083
256999
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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