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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWHG] human gut metagenome; ENVO:feces
HIT:
63 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540675
CWHG01000176
[CWHG] human gut metagenome; ENVO:feces
3
77
+
Gln
CTG
[ENA]
¢þ
>WENV170540633
CWHG01000061
[CWHG] human gut metagenome; ENVO:feces
38
113
+
Trp
CCA
[ENA]
¢þ
>WENV170540687
CWHG01000189
[CWHG] human gut metagenome; ENVO:feces
120
46
-
Gly
TCC
[ENA]
¢þ
>WENV170540658
CWHG01000113
[CWHG] human gut metagenome; ENVO:feces
151
76
-
Met
CAT
[ENA]
¢þ
>WENV170540669
CWHG01000157
[CWHG] human gut metagenome; ENVO:feces
190
266
+
Arg
ACG
[ENA]
¢þ
>WENV170540686
CWHG01000189
[CWHG] human gut metagenome; ENVO:feces
321
237
-
Tyr
GTA
[ENA]
¢þ
>WENV170540688
CWHG01000191
[CWHG] human gut metagenome; ENVO:feces
374
298
-
Pro
CGG
[ENA]
¢þ
>WENV170540685
CWHG01000189
[CWHG] human gut metagenome; ENVO:feces
405
330
-
Thr
TGT
[ENA]
¢þ
>WENV170540674
CWHG01000173
[CWHG] human gut metagenome; ENVO:feces
755
679
-
Arg
TCT
[ENA]
¢þ
>WENV170540632
CWHG01000051
[CWHG] human gut metagenome; ENVO:feces
1711
1617
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170540672
CWHG01000162
[CWHG] human gut metagenome; ENVO:feces
3017
3092
+
Met
CAT
[ENA]
¢þ
>WENV170540673
CWHG01000162
[CWHG] human gut metagenome; ENVO:feces
3190
3266
+
Arg
TCT
[ENA]
¢þ
>WENV170540659
CWHG01000118
[CWHG] human gut metagenome; ENVO:feces
4721
4796
+
Gly
GCC
[ENA]
¢þ
>WENV170540660
CWHG01000118
[CWHG] human gut metagenome; ENVO:feces
4851
4924
+
Cys
GCA
[ENA]
¢þ
>WENV170540662
CWHG01000125
[CWHG] human gut metagenome; ENVO:feces
11264
11178
-
Leu
CAG
[ENA]
¢þ
>WENV170540661
CWHG01000125
[CWHG] human gut metagenome; ENVO:feces
11379
11293
-
Leu
CAG
[ENA]
¢þ
>WENV170540670
CWHG01000158
[CWHG] human gut metagenome; ENVO:feces
12890
12965
+
Met
CAT
[ENA]
¢þ
>WENV170540657
CWHG01000106
[CWHG] human gut metagenome; ENVO:feces
14154
14238
+
Leu
CAA
[ENA]
¢þ
>WENV170540667
CWHG01000156
[CWHG] human gut metagenome; ENVO:feces
16674
16766
+
Ser
GCT
[ENA]
¢þ
>WENV170540671
CWHG01000160
[CWHG] human gut metagenome; ENVO:feces
16815
16731
-
Tyr
GTA
[ENA]
¢þ
>WENV170540668
CWHG01000156
[CWHG] human gut metagenome; ENVO:feces
17000
17076
+
Arg
ACG
[ENA]
¢þ
>WENV170540689
CWHG01000192
[CWHG] human gut metagenome; ENVO:feces
24536
24460
-
Asp
GTC
[ENA]
¢þ
>WENV170540690
CWHG01000193
[CWHG] human gut metagenome; ENVO:feces
27540
27615
+
Val
TAC
[ENA]
¢þ
>WENV170540691
CWHG01000193
[CWHG] human gut metagenome; ENVO:feces
27619
27694
+
Lys
TTT
[ENA]
¢þ
>WENV170540692
CWHG01000193
[CWHG] human gut metagenome; ENVO:feces
27844
27919
+
Val
TAC
[ENA]
¢þ
>WENV170540693
CWHG01000193
[CWHG] human gut metagenome; ENVO:feces
27923
27998
+
Lys
TTT
[ENA]
¢þ
>WENV170540694
CWHG01000193
[CWHG] human gut metagenome; ENVO:feces
28145
28220
+
Lys
TTT
[ENA]
¢þ
>WENV170540676
CWHG01000176
[CWHG] human gut metagenome; ENVO:feces
30665
30741
+
Met
CAT
[ENA]
¢þ
>WENV170540677
CWHG01000176
[CWHG] human gut metagenome; ENVO:feces
30750
30834
+
Leu
TAG
[ENA]
¢þ
>WENV170540678
CWHG01000176
[CWHG] human gut metagenome; ENVO:feces
30858
30932
+
Gln
TTG
[ENA]
¢þ
>WENV170540679
CWHG01000176
[CWHG] human gut metagenome; ENVO:feces
30967
31041
+
Gln
TTG
[ENA]
¢þ
>WENV170540680
CWHG01000176
[CWHG] human gut metagenome; ENVO:feces
31057
31133
+
Met
CAT
[ENA]
¢þ
>WENV170540681
CWHG01000176
[CWHG] human gut metagenome; ENVO:feces
31182
31256
+
Gln
CTG
[ENA]
¢þ
>WENV170540651
CWHG01000086
[CWHG] human gut metagenome; ENVO:feces
33979
33890
-
Ser
CGA
[ENA]
¢þ
>WENV170540646
CWHG01000082
[CWHG] human gut metagenome; ENVO:feces
34810
34735
-
Lys
TTT
[ENA]
¢þ
>WENV170540645
CWHG01000082
[CWHG] human gut metagenome; ENVO:feces
34889
34814
-
Val
TAC
[ENA]
¢þ
>WENV170540647
CWHG01000086
[CWHG] human gut metagenome; ENVO:feces
34971
35046
+
Asn
GTT
[ENA]
¢þ
>WENV170540644
CWHG01000082
[CWHG] human gut metagenome; ENVO:feces
35009
34934
-
Val
TAC
[ENA]
¢þ
>WENV170540643
CWHG01000082
[CWHG] human gut metagenome; ENVO:feces
35130
35056
-
Val
TAC
[ENA]
¢þ
>WENV170540634
CWHG01000061
[CWHG] human gut metagenome; ENVO:feces
35457
35533
+
Arg
CCG
[ENA]
¢þ
>WENV170540635
CWHG01000061
[CWHG] human gut metagenome; ENVO:feces
35592
35667
+
His
GTG
[ENA]
¢þ
>WENV170540636
CWHG01000061
[CWHG] human gut metagenome; ENVO:feces
35688
35774
+
Leu
CAG
[ENA]
¢þ
>WENV170540637
CWHG01000061
[CWHG] human gut metagenome; ENVO:feces
35817
35893
+
Pro
TGG
[ENA]
¢þ
>WENV170540666
CWHG01000147
[CWHG] human gut metagenome; ENVO:feces
37382
37458
+
Val
GAC
[ENA]
¢þ
>WENV170540639
CWHG01000082
[CWHG] human gut metagenome; ENVO:feces
37830
37905
+
Ala
GGC
[ENA]
¢þ
>WENV170540640
CWHG01000082
[CWHG] human gut metagenome; ENVO:feces
37945
38020
+
Ala
GGC
[ENA]
¢þ
>WENV170540650
CWHG01000086
[CWHG] human gut metagenome; ENVO:feces
49430
49355
-
Asn
GTT
[ENA]
¢þ
>WENV170540648
CWHG01000086
[CWHG] human gut metagenome; ENVO:feces
51179
51254
+
Asn
GTT
[ENA]
¢þ
>WENV170540649
CWHG01000086
[CWHG] human gut metagenome; ENVO:feces
53588
53663
+
Asn
GTT
[ENA]
¢þ
>WENV170540656
CWHG01000096
[CWHG] human gut metagenome; ENVO:feces
68300
68213
-
Ser
GGA
[ENA]
¢þ
>WENV170540652
CWHG01000090
[CWHG] human gut metagenome; ENVO:feces
85297
85383
+
Leu
GAG
[ENA]
¢þ
>WENV170540653
CWHG01000090
[CWHG] human gut metagenome; ENVO:feces
88286
88362
+
Met
CAT
[ENA]
¢þ
>WENV170540642
CWHG01000082
[CWHG] human gut metagenome; ENVO:feces
108094
108020
-
Arg
CCT
[ENA]
¢þ
>WENV170540638
CWHG01000073
[CWHG] human gut metagenome; ENVO:feces
120648
120573
-
Thr
CGT
[ENA]
¢þ
>WENV170540665
CWHG01000138
[CWHG] human gut metagenome; ENVO:feces
143721
143646
-
Phe
GAA
[ENA]
¢þ
>WENV170540682
CWHG01000179
[CWHG] human gut metagenome; ENVO:feces
171889
171962
+
Gly
CCC
[ENA]
¢þ
>WENV170540663
CWHG01000138
[CWHG] human gut metagenome; ENVO:feces
172902
172977
+
Gly
GCC
[ENA]
¢þ
>WENV170540664
CWHG01000138
[CWHG] human gut metagenome; ENVO:feces
173014
173089
+
Gly
GCC
[ENA]
¢þ
>WENV170540655
CWHG01000096
[CWHG] human gut metagenome; ENVO:feces
174282
174195
-
Ser
TGA
[ENA]
¢þ
>WENV170540654
CWHG01000090
[CWHG] human gut metagenome; ENVO:feces
198171
198096
-
Met
CAT
[ENA]
¢þ
>WENV170540684
CWHG01000179
[CWHG] human gut metagenome; ENVO:feces
258476
258400
-
Met
CAT
[ENA]
¢þ
>WENV170540683
CWHG01000179
[CWHG] human gut metagenome; ENVO:feces
258586
258510
-
Met
CAT
[ENA]
¢þ
>WENV170540641
CWHG01000082
[CWHG] human gut metagenome; ENVO:feces
270499
270423
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK