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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWHH] human gut metagenome; ENVO:feces
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540721
CWHH01000166
[CWHH] human gut metagenome; ENVO:feces
720
646
-
Asp
GTC
[ENA]
¢þ
>WENV170540718
CWHH01000126
[CWHH] human gut metagenome; ENVO:feces
1611
1538
-
Thr
CGT
[ENA]
¢þ
>WENV170540699
CWHH01000032
[CWHH] human gut metagenome; ENVO:feces
1666
1743
+
Pro
TGG
[ENA]
¢þ
>WENV170540700
CWHH01000032
[CWHH] human gut metagenome; ENVO:feces
1776
1853
+
Pro
TGG
[ENA]
¢þ
>WENV170540739
CWHH01000239
[CWHH] human gut metagenome; ENVO:feces
4364
4437
+
Phe
GAA
[ENA]
¢þ
>WENV170540740
CWHH01000239
[CWHH] human gut metagenome; ENVO:feces
4450
4523
+
Pro
CGG
[ENA]
¢þ
>WENV170540737
CWHH01000235
[CWHH] human gut metagenome; ENVO:feces
5364
5440
+
Thr
TGT
[ENA]
¢þ
>WENV170540714
CWHH01000074
[CWHH] human gut metagenome; ENVO:feces
5911
5984
+
Gln
TTG
[ENA]
¢þ
>WENV170540735
CWHH01000227
[CWHH] human gut metagenome; ENVO:feces
9858
9931
+
Gly
CCC
[ENA]
¢þ
>WENV170540703
CWHH01000035
[CWHH] human gut metagenome; ENVO:feces
10323
10397
+
Met
CAT
[ENA]
¢þ
>WENV170540704
CWHH01000038
[CWHH] human gut metagenome; ENVO:feces
10394
10468
+
Arg
CCT
[ENA]
¢þ
>WENV170540711
CWHH01000057
[CWHH] human gut metagenome; ENVO:feces
11467
11390
-
Val
TAC
[ENA]
¢þ
>WENV170540710
CWHH01000057
[CWHH] human gut metagenome; ENVO:feces
11576
11501
-
Val
TAC
[ENA]
¢þ
>WENV170540697
CWHH01000006
[CWHH] human gut metagenome; ENVO:feces
15502
15429
-
Trp
CCA
[ENA]
¢þ
>WENV170540702
CWHH01000032
[CWHH] human gut metagenome; ENVO:feces
21285
21210
-
Lys
CTT
[ENA]
¢þ
>WENV170540701
CWHH01000032
[CWHH] human gut metagenome; ENVO:feces
21390
21315
-
Lys
CTT
[ENA]
¢þ
>WENV170540734
CWHH01000209
[CWHH] human gut metagenome; ENVO:feces
26656
26729
+
Gln
CTG
[ENA]
¢þ
>WENV170540707
CWHH01000046
[CWHH] human gut metagenome; ENVO:feces
29206
29281
+
Met
CAT
[ENA]
¢þ
>WENV170540712
CWHH01000062
[CWHH] human gut metagenome; ENVO:feces
33170
33255
+
Tyr
GTA
[ENA]
¢þ
>WENV170540724
CWHH01000189
[CWHH] human gut metagenome; ENVO:feces
34728
34802
+
Arg
TCT
[ENA]
¢þ
>WENV170540723
CWHH01000178
[CWHH] human gut metagenome; ENVO:feces
44990
45063
+
Lys
TTT
[ENA]
¢þ
>WENV170540738
CWHH01000238
[CWHH] human gut metagenome; ENVO:feces
45792
45867
+
Phe
GAA
[ENA]
¢þ
>WENV170540696
CWHH01000003
[CWHH] human gut metagenome; ENVO:feces
53298
53223
-
Trp
CCA
[ENA]
¢þ
>WENV170540695
CWHH01000003
[CWHH] human gut metagenome; ENVO:feces
54658
54586
-
Thr
GGT
[ENA]
¢þ
>WENV170540722
CWHH01000172
[CWHH] human gut metagenome; ENVO:feces
59329
59255
-
Glu
TTC
[ENA]
¢þ
>WENV170540729
CWHH01000201
[CWHH] human gut metagenome; ENVO:feces
62887
62972
+
Ser
TGA
[ENA]
¢þ
>WENV170540720
CWHH01000133
[CWHH] human gut metagenome; ENVO:feces
64344
64270
-
Asp
GTC
[ENA]
¢þ
>WENV170540719
CWHH01000131
[CWHH] human gut metagenome; ENVO:feces
65804
65729
-
Lys
TTT
[ENA]
¢þ
>WENV170540728
CWHH01000200
[CWHH] human gut metagenome; ENVO:feces
81050
80977
-
Gly
GCC
[ENA]
¢þ
>WENV170540727
CWHH01000200
[CWHH] human gut metagenome; ENVO:feces
81153
81069
-
Leu
GAG
[ENA]
¢þ
>WENV170540726
CWHH01000200
[CWHH] human gut metagenome; ENVO:feces
81258
81174
-
Leu
CAG
[ENA]
¢þ
>WENV170540725
CWHH01000200
[CWHH] human gut metagenome; ENVO:feces
81363
81290
-
Gly
GCC
[ENA]
¢þ
>WENV170540709
CWHH01000046
[CWHH] human gut metagenome; ENVO:feces
82751
82665
-
Leu
TAA
[ENA]
¢þ
>WENV170540708
CWHH01000046
[CWHH] human gut metagenome; ENVO:feces
82840
82767
-
Gly
GCC
[ENA]
¢þ
>WENV170540715
CWHH01000084
[CWHH] human gut metagenome; ENVO:feces
82849
82938
+
Ser
GCT
[ENA]
¢þ
>WENV170540716
CWHH01000084
[CWHH] human gut metagenome; ENVO:feces
83001
83075
+
Glu
CTC
[ENA]
¢þ
>WENV170540736
CWHH01000229
[CWHH] human gut metagenome; ENVO:feces
92486
92570
+
Leu
TAG
[ENA]
¢þ
>WENV170540733
CWHH01000206
[CWHH] human gut metagenome; ENVO:feces
94752
94678
-
Ala
GGC
[ENA]
¢þ
>WENV170540713
CWHH01000073
[CWHH] human gut metagenome; ENVO:feces
137345
137419
+
Met
CAT
[ENA]
¢þ
>WENV170540741
CWHH01000240
[CWHH] human gut metagenome; ENVO:feces
139219
139143
-
Thr
TGT
[ENA]
¢þ
>WENV170540698
CWHH01000031
[CWHH] human gut metagenome; ENVO:feces
141242
141167
-
Pro
GGG
[ENA]
¢þ
>WENV170540706
CWHH01000038
[CWHH] human gut metagenome; ENVO:feces
141316
141240
-
Asn
GTT
[ENA]
¢þ
>WENV170540717
CWHH01000089
[CWHH] human gut metagenome; ENVO:feces
168694
168606
-
Ser
GGA
[ENA]
¢þ
>WENV170540705
CWHH01000038
[CWHH] human gut metagenome; ENVO:feces
169793
169879
+
Leu
CAA
[ENA]
¢þ
>WENV170540732
CWHH01000206
[CWHH] human gut metagenome; ENVO:feces
172081
172006
-
His
GTG
[ENA]
¢þ
>WENV170540730
CWHH01000206
[CWHH] human gut metagenome; ENVO:feces
190289
190363
+
Cys
GCA
[ENA]
¢þ
>WENV170540731
CWHH01000206
[CWHH] human gut metagenome; ENVO:feces
195510
195436
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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