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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[CWHI] human gut metagenome; ENVO:feces
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540750
CWHI01000493
[CWHI] human gut metagenome; ENVO:feces
107
34
-
Cys
GCA
[ENA]
¢þ
>WENV170540748
CWHI01000364
[CWHI] human gut metagenome; ENVO:feces
467
391
-
Arg
CCT
[ENA]
¢þ
>WENV170540749
CWHI01000382
[CWHI] human gut metagenome; ENVO:feces
851
926
+
Lys
CTT
[ENA]
¢þ
>WENV170540744
CWHI01000316
[CWHI] human gut metagenome; ENVO:feces
2238
2163
-
Trp
CCA
[ENA]
¢þ
>WENV170540747
CWHI01000357
[CWHI] human gut metagenome; ENVO:feces
2382
2307
-
Phe
GAA
[ENA]
¢þ
>WENV170540746
CWHI01000357
[CWHI] human gut metagenome; ENVO:feces
2466
2390
-
Met
CAT
[ENA]
¢þ
>WENV170540742
CWHI01000265
[CWHI] human gut metagenome; ENVO:feces
2551
2462
-
Ser
GGA
[ENA]
¢þ
>WENV170540745
CWHI01000357
[CWHI] human gut metagenome; ENVO:feces
2564
2474
-
Ser
GCT
[ENA]
¢þ
>WENV170540751
CWHI01000584
[CWHI] human gut metagenome; ENVO:feces
4003
4089
+
Leu
CAA
[ENA]
¢þ
>WENV170540743
CWHI01000267
[CWHI] human gut metagenome; ENVO:feces
9604
9529
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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