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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[CWHK] human gut metagenome; ENVO:feces
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540813
CWHK01000068
[CWHK] human gut metagenome; ENVO:feces
39
128
+
Ser
GCT
[ENA]
¢þ
>WENV170540814
CWHK01000068
[CWHK] human gut metagenome; ENVO:feces
142
215
+
Glu
TTC
[ENA]
¢þ
>WENV170540812
CWHK01000060
[CWHK] human gut metagenome; ENVO:feces
183
101
-
Tyr
GTA
[ENA]
¢þ
>WENV170540818
CWHK01000366
[CWHK] human gut metagenome; ENVO:feces
343
256
-
Leu
GAG
[ENA]
¢þ
>WENV170540829
CWHK01000832
[CWHK] human gut metagenome; ENVO:feces
810
883
+
Lys
CTT
[ENA]
¢þ
>WENV170540827
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
936
851
-
Leu
CAA
[ENA]
¢þ
>WENV170540826
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
1019
949
-
Cys
GCA
[ENA]
¢þ
>WENV170540825
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
1117
1044
-
Gln
TTG
[ENA]
¢þ
>WENV170540824
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
1203
1130
-
His
GTG
[ENA]
¢þ
>WENV170540823
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
1313
1240
-
Trp
CCA
[ENA]
¢þ
>WENV170540822
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
1399
1317
-
Tyr
GTA
[ENA]
¢þ
>WENV170540821
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
1476
1404
-
Phe
GAA
[ENA]
¢þ
>WENV170540820
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
1597
1522
-
Asp
GTC
[ENA]
¢þ
>WENV170540819
CWHK01000766
[CWHK] human gut metagenome; ENVO:feces
1681
1607
-
Val
TAC
[ENA]
¢þ
>WENV170540817
CWHK01000331
[CWHK] human gut metagenome; ENVO:feces
2903
2992
+
Ser
CGA
[ENA]
¢þ
>WENV170540828
CWHK01000817
[CWHK] human gut metagenome; ENVO:feces
4939
4864
-
Arg
CCT
[ENA]
¢þ
>WENV170540830
CWHK01000936
[CWHK] human gut metagenome; ENVO:feces
5520
5447
-
Arg
CCG
[ENA]
¢þ
>WENV170540815
CWHK01000129
[CWHK] human gut metagenome; ENVO:feces
5787
5862
+
Arg
TCT
[ENA]
¢þ
>WENV170540816
CWHK01000325
[CWHK] human gut metagenome; ENVO:feces
6830
6902
+
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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