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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[CWHL] human gut metagenome; ENVO:feces
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540852
CWHL01000194
[CWHL] human gut metagenome; ENVO:feces
8
80
+
Trp
CCA
[ENA]
¢þ
>WENV170540847
CWHL01000193
[CWHL] human gut metagenome; ENVO:feces
79
169
+
Ser
GGA
[ENA]
¢þ
>WENV170540853
CWHL01000194
[CWHL] human gut metagenome; ENVO:feces
97
170
+
His
GTG
[ENA]
¢þ
>WENV170540858
CWHL01000202
[CWHL] human gut metagenome; ENVO:feces
124
199
+
Met
CAT
[ENA]
¢þ
>WENV170540854
CWHL01000194
[CWHL] human gut metagenome; ENVO:feces
180
253
+
Gln
TTG
[ENA]
¢þ
>WENV170540848
CWHL01000193
[CWHL] human gut metagenome; ENVO:feces
185
258
+
Glu
TTC
[ENA]
¢þ
>WENV170540849
CWHL01000193
[CWHL] human gut metagenome; ENVO:feces
272
346
+
Val
TAC
[ENA]
¢þ
>WENV170540855
CWHL01000194
[CWHL] human gut metagenome; ENVO:feces
322
392
+
Cys
GCA
[ENA]
¢þ
>WENV170540850
CWHL01000193
[CWHL] human gut metagenome; ENVO:feces
349
424
+
Asp
GTC
[ENA]
¢þ
>WENV170540856
CWHL01000194
[CWHL] human gut metagenome; ENVO:feces
416
501
+
Leu
CAA
[ENA]
¢þ
>WENV170540851
CWHL01000193
[CWHL] human gut metagenome; ENVO:feces
455
527
+
Phe
GAA
[ENA]
¢þ
>WENV170540857
CWHL01000194
[CWHL] human gut metagenome; ENVO:feces
560
635
+
His
GTG
[ENA]
¢þ
>WENV170540846
CWHL01000184
[CWHL] human gut metagenome; ENVO:feces
859
955
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170540840
CWHL01000085
[CWHL] human gut metagenome; ENVO:feces
4240
4314
+
Met
CAT
[ENA]
¢þ
>WENV170540839
CWHL01000084
[CWHL] human gut metagenome; ENVO:feces
5553
5483
-
Gly
CCC
[ENA]
¢þ
>WENV170540833
CWHL01000011
[CWHL] human gut metagenome; ENVO:feces
10079
9994
-
Leu
CAG
[ENA]
¢þ
>WENV170540835
CWHL01000039
[CWHL] human gut metagenome; ENVO:feces
11246
11329
+
Leu
AAG
[ENA]
¢þ
>WENV170540859
CWHL01000212
[CWHL] human gut metagenome; ENVO:feces
12351
12426
+
Arg
CCT
[ENA]
¢þ
>WENV170540842
CWHL01000120
[CWHL] human gut metagenome; ENVO:feces
14623
14548
-
Asn
GTT
[ENA]
¢þ
>WENV170540845
CWHL01000160
[CWHL] human gut metagenome; ENVO:feces
15648
15735
+
Ser
CGA
[ENA]
¢þ
>WENV170540841
CWHL01000120
[CWHL] human gut metagenome; ENVO:feces
16019
16092
+
Thr
GGT
[ENA]
¢þ
>WENV170540831
CWHL01000010
[CWHL] human gut metagenome; ENVO:feces
19943
20017
+
Lys
CTT
[ENA]
¢þ
>WENV170540834
CWHL01000036
[CWHL] human gut metagenome; ENVO:feces
21832
21907
+
Thr
CGT
[ENA]
¢þ
>WENV170540843
CWHL01000128
[CWHL] human gut metagenome; ENVO:feces
23654
23727
+
Glu
CTC
[ENA]
¢þ
>WENV170540844
CWHL01000138
[CWHL] human gut metagenome; ENVO:feces
25126
25199
+
Arg
CCG
[ENA]
¢þ
>WENV170540836
CWHL01000052
[CWHL] human gut metagenome; ENVO:feces
40912
40838
-
Gln
CTG
[ENA]
¢þ
>WENV170540838
CWHL01000067
[CWHL] human gut metagenome; ENVO:feces
68055
67982
-
Gln
TTG
[ENA]
¢þ
>WENV170540837
CWHL01000067
[CWHL] human gut metagenome; ENVO:feces
68139
68056
-
Tyr
GTA
[ENA]
¢þ
>WENV170540832
CWHL01000010
[CWHL] human gut metagenome; ENVO:feces
73391
73468
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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