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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[CWHM] human gut metagenome; ENVO:feces
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540875
CWHM01000069
[CWHM] human gut metagenome; ENVO:feces
77
3
-
Glu
CTC
[ENA]
¢þ
>WENV170540860
CWHM01000001
[CWHM] human gut metagenome; ENVO:feces
115
39
-
Pro
CGG
[ENA]
¢þ
>WENV170540884
CWHM01000197
[CWHM] human gut metagenome; ENVO:feces
122
46
-
Arg
CCT
[ENA]
¢þ
>WENV170540874
CWHM01000069
[CWHM] human gut metagenome; ENVO:feces
155
80
-
Lys
CTT
[ENA]
¢þ
>WENV170540876
CWHM01000092
[CWHM] human gut metagenome; ENVO:feces
180
105
-
Val
GAC
[ENA]
¢þ
>WENV170540891
CWHM01000269
[CWHM] human gut metagenome; ENVO:feces
243
168
-
Lys
TTT
[ENA]
¢þ
>WENV170540890
CWHM01000269
[CWHM] human gut metagenome; ENVO:feces
320
247
-
Gln
TTG
[ENA]
¢þ
>WENV170540862
CWHM01000008
[CWHM] human gut metagenome; ENVO:feces
323
249
-
Glu
TTC
[ENA]
¢þ
>WENV170540871
CWHM01000054
[CWHM] human gut metagenome; ENVO:feces
428
503
+
Ala
GGC
[ENA]
¢þ
>WENV170540889
CWHM01000269
[CWHM] human gut metagenome; ENVO:feces
461
386
-
His
GTG
[ENA]
¢þ
>WENV170540861
CWHM01000008
[CWHM] human gut metagenome; ENVO:feces
473
397
-
Met
CAT
[ENA]
¢þ
>WENV170540888
CWHM01000269
[CWHM] human gut metagenome; ENVO:feces
563
487
-
Arg
TCT
[ENA]
¢þ
>WENV170540887
CWHM01000269
[CWHM] human gut metagenome; ENVO:feces
640
567
-
Gly
TCC
[ENA]
¢þ
>WENV170540893
CWHM01000315
[CWHM] human gut metagenome; ENVO:feces
682
757
+
Thr
CGT
[ENA]
¢þ
>WENV170540880
CWHM01000134
[CWHM] human gut metagenome; ENVO:feces
1695
1622
-
Cys
GCA
[ENA]
¢þ
>WENV170540879
CWHM01000134
[CWHM] human gut metagenome; ENVO:feces
1814
1739
-
Gly
GCC
[ENA]
¢þ
>WENV170540896
CWHM01000415
[CWHM] human gut metagenome; ENVO:feces
2070
1994
-
Met
CAT
[ENA]
¢þ
>WENV170540895
CWHM01000415
[CWHM] human gut metagenome; ENVO:feces
2160
2074
-
Leu
TAA
[ENA]
¢þ
>WENV170540897
CWHM01000462
[CWHM] human gut metagenome; ENVO:feces
2234
2320
+
Leu
CAA
[ENA]
¢þ
>WENV170540873
CWHM01000069
[CWHM] human gut metagenome; ENVO:feces
3427
3352
-
Ala
TGC
[ENA]
¢þ
>WENV170540872
CWHM01000069
[CWHM] human gut metagenome; ENVO:feces
3514
3438
-
Ile
GAT
[ENA]
¢þ
>WENV170540878
CWHM01000112
[CWHM] human gut metagenome; ENVO:feces
3548
3624
+
Arg
CCG
[ENA]
¢þ
>WENV170540868
CWHM01000041
[CWHM] human gut metagenome; ENVO:feces
4026
4113
+
Ser
TGA
[ENA]
¢þ
>WENV170540869
CWHM01000041
[CWHM] human gut metagenome; ENVO:feces
4146
4236
+
Ser
GCT
[ENA]
¢þ
>WENV170540886
CWHM01000225
[CWHM] human gut metagenome; ENVO:feces
4673
4749
+
Pro
GGG
[ENA]
¢þ
>WENV170540898
CWHM01000470
[CWHM] human gut metagenome; ENVO:feces
4975
4902
-
Gly
CCC
[ENA]
¢þ
>WENV170540902
CWHM01000511
[CWHM] human gut metagenome; ENVO:feces
6004
5917
-
Leu
CAG
[ENA]
¢þ
>WENV170540901
CWHM01000511
[CWHM] human gut metagenome; ENVO:feces
6173
6258
+
Leu
GAG
[ENA]
¢þ
>WENV170540881
CWHM01000135
[CWHM] human gut metagenome; ENVO:feces
7362
7437
+
Val
TAC
[ENA]
¢þ
>WENV170540882
CWHM01000135
[CWHM] human gut metagenome; ENVO:feces
7473
7549
+
Asp
GTC
[ENA]
¢þ
>WENV170540883
CWHM01000135
[CWHM] human gut metagenome; ENVO:feces
7553
7628
+
Phe
GAA
[ENA]
¢þ
>WENV170540870
CWHM01000041
[CWHM] human gut metagenome; ENVO:feces
8535
8608
+
Gln
TTG
[ENA]
¢þ
>WENV170540899
CWHM01000477
[CWHM] human gut metagenome; ENVO:feces
10710
10785
+
Thr
TGT
[ENA]
¢þ
>WENV170540900
CWHM01000477
[CWHM] human gut metagenome; ENVO:feces
10798
10882
+
Tyr
GTA
[ENA]
¢þ
>WENV170540904
CWHM01000516
[CWHM] human gut metagenome; ENVO:feces
10886
10812
-
Pro
TGG
[ENA]
¢þ
>WENV170540892
CWHM01000279
[CWHM] human gut metagenome; ENVO:feces
16906
16830
-
Arg
ACG
[ENA]
¢þ
>WENV170540885
CWHM01000224
[CWHM] human gut metagenome; ENVO:feces
22190
22097
-
Ser
CGA
[ENA]
¢þ
>WENV170540867
CWHM01000025
[CWHM] human gut metagenome; ENVO:feces
29723
29648
-
Thr
GGT
[ENA]
¢þ
>WENV170540866
CWHM01000025
[CWHM] human gut metagenome; ENVO:feces
29803
29727
-
Asp
GTC
[ENA]
¢þ
>WENV170540865
CWHM01000025
[CWHM] human gut metagenome; ENVO:feces
29918
29843
-
Trp
CCA
[ENA]
¢þ
>WENV170540864
CWHM01000025
[CWHM] human gut metagenome; ENVO:feces
29998
29922
-
Met
CAT
[ENA]
¢þ
>WENV170540863
CWHM01000025
[CWHM] human gut metagenome; ENVO:feces
30141
30066
-
Asn
GTT
[ENA]
¢þ
>WENV170540894
CWHM01000365
[CWHM] human gut metagenome; ENVO:feces
30663
30576
-
Leu
CAG
[ENA]
¢þ
>WENV170540903
CWHM01000516
[CWHM] human gut metagenome; ENVO:feces
36107
36032
-
Ala
CGC
[ENA]
¢þ
>WENV170540877
CWHM01000099
[CWHM] human gut metagenome; ENVO:feces
53491
53406
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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