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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[CZKA] metagenome; liquid mineral medium
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180000050
CZKA01000074
[CZKA] metagenome; liquid mineral medium
336
262
-
Val
CAC
[ENA]
¢þ
>WENV180000047
CZKA01000074
[CZKA] metagenome; liquid mineral medium
1965
2038
+
Gly
GCC
[ENA]
¢þ
>WENV180000048
CZKA01000074
[CZKA] metagenome; liquid mineral medium
2059
2130
+
Cys
GCA
[ENA]
¢þ
>WENV180000049
CZKA01000074
[CZKA] metagenome; liquid mineral medium
2158
2232
+
Val
GAC
[ENA]
¢þ
>WENV180000045
CZKA01000067
[CZKA] metagenome; liquid mineral medium
2661
2573
-
Leu
GAG
[ENA]
¢þ
>WENV180000046
CZKA01000073
[CZKA] metagenome; liquid mineral medium
5474
5549
+
Pro
GGG
[ENA]
¢þ
>WENV180000037
CZKA01000040
[CZKA] metagenome; liquid mineral medium
5565
5490
-
Ala
CGC
[ENA]
¢þ
>WENV180000041
CZKA01000048
[CZKA] metagenome; liquid mineral medium
7814
7732
-
Leu
TAG
[ENA]
¢þ
>WENV180000042
CZKA01000063
[CZKA] metagenome; liquid mineral medium
8529
8603
+
Arg
TCT
[ENA]
¢þ
>WENV180000025
CZKA01000020
[CZKA] metagenome; liquid mineral medium
8705
8630
-
Phe
GAA
[ENA]
¢þ
>WENV180000015
CZKA01000015
[CZKA] metagenome; liquid mineral medium
8799
8874
+
Gly
CCC
[ENA]
¢þ
>WENV180000021
CZKA01000020
[CZKA] metagenome; liquid mineral medium
8827
8900
+
Glu
TTC
[ENA]
¢þ
>WENV180000022
CZKA01000020
[CZKA] metagenome; liquid mineral medium
8996
9070
+
Asp
GTC
[ENA]
¢þ
>WENV180000054
CZKA01000078
[CZKA] metagenome; liquid mineral medium
12616
12541
-
Thr
CGT
[ENA]
¢þ
>WENV180000036
CZKA01000040
[CZKA] metagenome; liquid mineral medium
17426
17499
+
Arg
CCT
[ENA]
¢þ
>WENV180000010
CZKA01000007
[CZKA] metagenome; liquid mineral medium
18367
18440
+
Asn
GTT
[ENA]
¢þ
>WENV180000018
CZKA01000016
[CZKA] metagenome; liquid mineral medium
21533
21612
+
Gln
TTG
[ENA]
¢þ
>WENV180000024
CZKA01000020
[CZKA] metagenome; liquid mineral medium
21626
21553
-
Lys
TTT
[ENA]
¢þ
>WENV180000014
CZKA01000013
[CZKA] metagenome; liquid mineral medium
22043
21959
-
Leu
CAG
[ENA]
¢þ
>WENV180000044
CZKA01000066
[CZKA] metagenome; liquid mineral medium
28022
27947
-
Lys
CTT
[ENA]
¢þ
>WENV180000043
CZKA01000066
[CZKA] metagenome; liquid mineral medium
31031
30956
-
His
GTG
[ENA]
¢þ
>WENV180000028
CZKA01000022
[CZKA] metagenome; liquid mineral medium
32032
31959
-
Arg
ACG
[ENA]
¢þ
>WENV180000027
CZKA01000022
[CZKA] metagenome; liquid mineral medium
36114
36024
-
Ser
GCT
[ENA]
¢þ
>WENV180000026
CZKA01000022
[CZKA] metagenome; liquid mineral medium
37216
37126
-
Ser
TGA
[ENA]
¢þ
>WENV180000035
CZKA01000037
[CZKA] metagenome; liquid mineral medium
44329
44256
-
Trp
CCA
[ENA]
¢þ
>WENV180000013
CZKA01000011
[CZKA] metagenome; liquid mineral medium
45267
45194
-
Val
TAC
[ENA]
¢þ
>WENV180000034
CZKA01000037
[CZKA] metagenome; liquid mineral medium
50023
49949
-
Met
CAT
[ENA]
¢þ
>WENV180000033
CZKA01000037
[CZKA] metagenome; liquid mineral medium
50147
50074
-
Thr
GGT
[ENA]
¢þ
>WENV180000019
CZKA01000016
[CZKA] metagenome; liquid mineral medium
59373
59447
+
Leu
TAA
[ENA]
¢þ
>WENV180000051
CZKA01000078
[CZKA] metagenome; liquid mineral medium
59893
59967
+
Pro
CGG
[ENA]
¢þ
>WENV180000031
CZKA01000029
[CZKA] metagenome; liquid mineral medium
66692
66764
+
Gln
CTG
[ENA]
¢þ
>WENV180000032
CZKA01000029
[CZKA] metagenome; liquid mineral medium
66833
66910
+
Glu
CTC
[ENA]
¢þ
>WENV180000052
CZKA01000078
[CZKA] metagenome; liquid mineral medium
67933
68020
+
Ser
GGA
[ENA]
¢þ
>WENV180000030
CZKA01000025
[CZKA] metagenome; liquid mineral medium
79501
79429
-
Arg
CCG
[ENA]
¢þ
>WENV180000053
CZKA01000078
[CZKA] metagenome; liquid mineral medium
88418
88329
-
Ser
CGA
[ENA]
¢þ
>WENV180000009
CZKA01000004
[CZKA] metagenome; liquid mineral medium
98080
98007
-
Leu
CAA
[ENA]
¢þ
>WENV180000020
CZKA01000017
[CZKA] metagenome; liquid mineral medium
100835
100760
-
Gly
CCC
[ENA]
¢þ
>WENV180000023
CZKA01000020
[CZKA] metagenome; liquid mineral medium
105084
105157
+
Thr
TGT
[ENA]
¢þ
>WENV180000012
CZKA01000009
[CZKA] metagenome; liquid mineral medium
111103
111186
+
Tyr
GTA
[ENA]
¢þ
>WENV180000011
CZKA01000007
[CZKA] metagenome; liquid mineral medium
124948
125023
+
Ile2
CAT
[ENA]
¢þ
>WENV180000040
CZKA01000043
[CZKA] metagenome; liquid mineral medium
134125
134049
-
fMet
CAT
[ENA]
¢þ
>WENV180000039
CZKA01000043
[CZKA] metagenome; liquid mineral medium
162326
162253
-
Pro
TGG
[ENA]
¢þ
>WENV180000038
CZKA01000043
[CZKA] metagenome; liquid mineral medium
162434
162363
-
Gly
TCC
[ENA]
¢þ
>WENV180000029
CZKA01000025
[CZKA] metagenome; liquid mineral medium
192846
192919
+
Ala
GGC
[ENA]
¢þ
>WENV180000016
CZKA01000015
[CZKA] metagenome; liquid mineral medium
261576
261651
+
Ile
GAT
[ENA]
¢þ
>WENV180000017
CZKA01000015
[CZKA] metagenome; liquid mineral medium
261833
261907
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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