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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[CZKB] metagenome; liquid mineral medium
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180000088
CZKB01000027
[CZKB] metagenome; liquid mineral medium
2947
3021
+
Pro
CGG
[ENA]
¢þ
>WENV180000085
CZKB01000019
[CZKB] metagenome; liquid mineral medium
4866
4792
-
Ile2
CAT
[ENA]
¢þ
>WENV180000089
CZKB01000027
[CZKB] metagenome; liquid mineral medium
10287
10374
+
Ser
GGA
[ENA]
¢þ
>WENV180000099
CZKB01000029
[CZKB] metagenome; liquid mineral medium
12357
12283
-
Pro
TGG
[ENA]
¢þ
>WENV180000098
CZKB01000029
[CZKB] metagenome; liquid mineral medium
12477
12404
-
Gly
TCC
[ENA]
¢þ
>WENV180000057
CZKB01000003
[CZKB] metagenome; liquid mineral medium
17272
17345
+
Val
TAC
[ENA]
¢þ
>WENV180000058
CZKB01000004
[CZKB] metagenome; liquid mineral medium
18165
18238
+
Arg
TCT
[ENA]
¢þ
>WENV180000059
CZKB01000004
[CZKB] metagenome; liquid mineral medium
22648
22722
+
His
GTG
[ENA]
¢þ
>WENV180000084
CZKB01000019
[CZKB] metagenome; liquid mineral medium
30153
30080
-
Asn
GTT
[ENA]
¢þ
>WENV180000060
CZKB01000004
[CZKB] metagenome; liquid mineral medium
30302
30375
+
Lys
CTT
[ENA]
¢þ
>WENV180000096
CZKB01000027
[CZKB] metagenome; liquid mineral medium
33202
33117
-
Ser
TGA
[ENA]
¢þ
>WENV180000090
CZKB01000027
[CZKB] metagenome; liquid mineral medium
33828
33919
+
Ser
GCT
[ENA]
¢þ
>WENV180000070
CZKB01000005
[CZKB] metagenome; liquid mineral medium
34084
34009
-
Ala
CGC
[ENA]
¢þ
>WENV180000061
CZKB01000004
[CZKB] metagenome; liquid mineral medium
36557
36631
+
Leu
TAG
[ENA]
¢þ
>WENV180000082
CZKB01000018
[CZKB] metagenome; liquid mineral medium
37554
37479
-
Arg
CCG
[ENA]
¢þ
>WENV180000091
CZKB01000027
[CZKB] metagenome; liquid mineral medium
43644
43717
+
Arg
ACG
[ENA]
¢þ
>WENV180000064
CZKB01000005
[CZKB] metagenome; liquid mineral medium
45975
46050
+
Arg
CCT
[ENA]
¢þ
>WENV180000086
CZKB01000025
[CZKB] metagenome; liquid mineral medium
78878
78951
+
Val
CAC
[ENA]
¢þ
>WENV180000074
CZKB01000008
[CZKB] metagenome; liquid mineral medium
83658
83584
-
Val
GAC
[ENA]
¢þ
>WENV180000073
CZKB01000008
[CZKB] metagenome; liquid mineral medium
83750
83679
-
Cys
GCA
[ENA]
¢þ
>WENV180000072
CZKB01000008
[CZKB] metagenome; liquid mineral medium
83857
83784
-
Gly
GCC
[ENA]
¢þ
>WENV180000076
CZKB01000014
[CZKB] metagenome; liquid mineral medium
90358
90284
-
fMet
CAT
[ENA]
¢þ
>WENV180000083
CZKB01000019
[CZKB] metagenome; liquid mineral medium
99424
99349
-
Ala
GGC
[ENA]
¢þ
>WENV180000071
CZKB01000008
[CZKB] metagenome; liquid mineral medium
101022
100949
-
Leu
CAA
[ENA]
¢þ
>WENV180000097
CZKB01000028
[CZKB] metagenome; liquid mineral medium
102948
102874
-
Thr
CGT
[ENA]
¢þ
>WENV180000055
CZKB01000001
[CZKB] metagenome; liquid mineral medium
123459
123531
+
Gln
CTG
[ENA]
¢þ
>WENV180000056
CZKB01000001
[CZKB] metagenome; liquid mineral medium
123621
123694
+
Glu
CTC
[ENA]
¢þ
>WENV180000092
CZKB01000027
[CZKB] metagenome; liquid mineral medium
160315
160404
+
Ser
CGA
[ENA]
¢þ
>WENV180000065
CZKB01000005
[CZKB] metagenome; liquid mineral medium
185532
185606
+
Lys
TTT
[ENA]
¢þ
>WENV180000069
CZKB01000005
[CZKB] metagenome; liquid mineral medium
200876
200800
-
Asp
GTC
[ENA]
¢þ
>WENV180000068
CZKB01000005
[CZKB] metagenome; liquid mineral medium
201031
200958
-
Glu
TTC
[ENA]
¢þ
>WENV180000066
CZKB01000005
[CZKB] metagenome; liquid mineral medium
204297
204373
+
Phe
GAA
[ENA]
¢þ
>WENV180000075
CZKB01000009
[CZKB] metagenome; liquid mineral medium
228445
228370
-
Pro
GGG
[ENA]
¢þ
>WENV180000095
CZKB01000027
[CZKB] metagenome; liquid mineral medium
256734
256648
-
Leu
CAG
[ENA]
¢þ
>WENV180000094
CZKB01000027
[CZKB] metagenome; liquid mineral medium
274403
274328
-
Ala
TGC
[ENA]
¢þ
>WENV180000093
CZKB01000027
[CZKB] metagenome; liquid mineral medium
274663
274589
-
Ile
GAT
[ENA]
¢þ
>WENV180000063
CZKB01000004
[CZKB] metagenome; liquid mineral medium
282700
282626
-
Leu
TAA
[ENA]
¢þ
>WENV180000087
CZKB01000025
[CZKB] metagenome; liquid mineral medium
320396
320310
-
Leu
GAG
[ENA]
¢þ
>WENV180000062
CZKB01000004
[CZKB] metagenome; liquid mineral medium
358378
358297
-
Gln
TTG
[ENA]
¢þ
>WENV180000081
CZKB01000017
[CZKB] metagenome; liquid mineral medium
379675
379603
-
Thr
TGT
[ENA]
¢þ
>WENV180000067
CZKB01000005
[CZKB] metagenome; liquid mineral medium
412930
412855
-
Gly
CCC
[ENA]
¢þ
>WENV180000080
CZKB01000017
[CZKB] metagenome; liquid mineral medium
471647
471574
-
Trp
CCA
[ENA]
¢þ
>WENV180000079
CZKB01000017
[CZKB] metagenome; liquid mineral medium
475045
474969
-
Met
CAT
[ENA]
¢þ
>WENV180000078
CZKB01000017
[CZKB] metagenome; liquid mineral medium
475153
475080
-
Thr
GGT
[ENA]
¢þ
>WENV180000077
CZKB01000017
[CZKB] metagenome; liquid mineral medium
500905
500823
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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