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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
HIT:
9 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170564183
CZKE01000269
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
6
81
+
His
GTG
[ENA]
¢þ
>WENV170564188
CZKE01000616
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
118
204
+
Leu
TAG
[ENA]
¢þ
>WENV170564186
CZKE01000458
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
620
544
-
Met
CAT
[ENA]
¢þ
>WENV170564181
CZKE01000056
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
1958
2034
+
Arg
TCG
[ENA]
¢þ
>WENV170564182
CZKE01000182
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
2002
2077
+
Gly
GCC
[ENA]
¢þ
>WENV170564180
CZKE01000025
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
2028
1952
-
Val
GAC
[ENA]
¢þ
>WENV170564184
CZKE01000284
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
4139
4063
-
Arg
TCT
[ENA]
¢þ
>WENV170564185
CZKE01000408
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
4641
4715
+
Asn
GTT
[ENA]
¢þ
>WENV170564187
CZKE01000521
[CZKE] soil metagenome genome assembly CiPEHR-AK-2010-FBin.15, contig:; soil
6878
6790
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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