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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[CZPY] metagenome; PAHs-polluted Soil
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170564890
CZPY01000041
[CZPY] metagenome; PAHs-polluted Soil
77
1
-
Met
CAT
[ENA]
¢þ
>WENV170564876
CZPY01000016
[CZPY] metagenome; PAHs-polluted Soil
948
1024
+
Ile
GAT
[ENA]
¢þ
>WENV170564877
CZPY01000016
[CZPY] metagenome; PAHs-polluted Soil
1047
1122
+
Ala
TGC
[ENA]
¢þ
>WENV170564892
CZPY01000042
[CZPY] metagenome; PAHs-polluted Soil
1162
1087
-
Ala
TGC
[ENA]
¢þ
>WENV170564891
CZPY01000042
[CZPY] metagenome; PAHs-polluted Soil
1261
1185
-
Ile
GAT
[ENA]
¢þ
>WENV170564878
CZPY01000017
[CZPY] metagenome; PAHs-polluted Soil
1694
1770
+
Met
CAT
[ENA]
¢þ
>WENV170564870
CZPY01000013
[CZPY] metagenome; PAHs-polluted Soil
1694
1770
+
Met
CAT
[ENA]
¢þ
>WENV170564879
CZPY01000022
[CZPY] metagenome; PAHs-polluted Soil
1694
1770
+
Met
CAT
[ENA]
¢þ
>WENV170564856
CZPY01000006
[CZPY] metagenome; PAHs-polluted Soil
4494
4411
-
Leu
CAA
[ENA]
¢þ
>WENV170564869
CZPY01000012
[CZPY] metagenome; PAHs-polluted Soil
5023
4947
-
Pro
CGG
[ENA]
¢þ
>WENV170564889
CZPY01000034
[CZPY] metagenome; PAHs-polluted Soil
6889
6815
-
Thr
GGT
[ENA]
¢þ
>WENV170564847
CZPY01000003
[CZPY] metagenome; PAHs-polluted Soil
12068
12142
+
Gln
TTG
[ENA]
¢þ
>WENV170564863
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
20190
20114
-
Pro
TGG
[ENA]
¢þ
>WENV170564849
CZPY01000003
[CZPY] metagenome; PAHs-polluted Soil
43289
43213
-
Arg
TCT
[ENA]
¢þ
>WENV170564844
CZPY01000001
[CZPY] metagenome; PAHs-polluted Soil
45102
45175
+
Gly
CCC
[ENA]
¢þ
>WENV170564884
CZPY01000034
[CZPY] metagenome; PAHs-polluted Soil
46997
47083
+
Leu
GAG
[ENA]
¢þ
>WENV170564855
CZPY01000006
[CZPY] metagenome; PAHs-polluted Soil
49953
49877
-
His
GTG
[ENA]
¢þ
>WENV170564864
CZPY01000012
[CZPY] metagenome; PAHs-polluted Soil
55538
55613
+
Lys
TTT
[ENA]
¢þ
>WENV170564858
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
57060
57145
+
Leu
TAA
[ENA]
¢þ
>WENV170564881
CZPY01000028
[CZPY] metagenome; PAHs-polluted Soil
57570
57481
-
Ser
TGA
[ENA]
¢þ
>WENV170564888
CZPY01000034
[CZPY] metagenome; PAHs-polluted Soil
59002
58927
-
Phe
GAA
[ENA]
¢þ
>WENV170564868
CZPY01000012
[CZPY] metagenome; PAHs-polluted Soil
65715
65640
-
Ala
CGC
[ENA]
¢þ
>WENV170564875
CZPY01000015
[CZPY] metagenome; PAHs-polluted Soil
73397
73472
+
Trp
CCA
[ENA]
¢þ
>WENV170564857
CZPY01000007
[CZPY] metagenome; PAHs-polluted Soil
80287
80376
+
Ser
CGA
[ENA]
¢þ
>WENV170564854
CZPY01000006
[CZPY] metagenome; PAHs-polluted Soil
84185
84259
+
Asn
GTT
[ENA]
¢þ
>WENV170564859
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
88146
88222
+
Arg
ACG
[ENA]
¢þ
>WENV170564860
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
99182
99258
+
Arg
CCT
[ENA]
¢þ
>WENV170564862
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
101120
101037
-
Tyr
GTA
[ENA]
¢þ
>WENV170564845
CZPY01000001
[CZPY] metagenome; PAHs-polluted Soil
101310
101385
+
Thr
CGT
[ENA]
¢þ
>WENV170564882
CZPY01000030
[CZPY] metagenome; PAHs-polluted Soil
108235
108311
+
Met
CAT
[ENA]
¢þ
>WENV170564850
CZPY01000004
[CZPY] metagenome; PAHs-polluted Soil
110520
110597
+
Pro
GGG
[ENA]
¢þ
>WENV170564885
CZPY01000034
[CZPY] metagenome; PAHs-polluted Soil
116392
116468
+
Asp
GTC
[ENA]
¢þ
>WENV170564886
CZPY01000034
[CZPY] metagenome; PAHs-polluted Soil
116496
116572
+
Asp
GTC
[ENA]
¢þ
>WENV170564883
CZPY01000030
[CZPY] metagenome; PAHs-polluted Soil
123451
123540
+
Ser
GGA
[ENA]
¢þ
>WENV170564874
CZPY01000014
[CZPY] metagenome; PAHs-polluted Soil
124423
124334
-
Ser
GCT
[ENA]
¢þ
>WENV170564851
CZPY01000004
[CZPY] metagenome; PAHs-polluted Soil
126701
126775
+
Glu
TTC
[ENA]
¢þ
>WENV170564848
CZPY01000003
[CZPY] metagenome; PAHs-polluted Soil
127358
127283
-
Val
TAC
[ENA]
¢þ
>WENV170564852
CZPY01000004
[CZPY] metagenome; PAHs-polluted Soil
130181
130255
+
Glu
TTC
[ENA]
¢þ
>WENV170564853
CZPY01000004
[CZPY] metagenome; PAHs-polluted Soil
136417
136491
+
Val
CAC
[ENA]
¢þ
>WENV170564887
CZPY01000034
[CZPY] metagenome; PAHs-polluted Soil
141609
141683
+
Thr
TGT
[ENA]
¢þ
>WENV170564846
CZPY01000001
[CZPY] metagenome; PAHs-polluted Soil
172892
172976
+
Leu
TAG
[ENA]
¢þ
>WENV170564871
CZPY01000014
[CZPY] metagenome; PAHs-polluted Soil
196389
196464
+
Met
CAT
[ENA]
¢þ
>WENV170564865
CZPY01000012
[CZPY] metagenome; PAHs-polluted Soil
217538
217612
+
Gly
GCC
[ENA]
¢þ
>WENV170564872
CZPY01000014
[CZPY] metagenome; PAHs-polluted Soil
221827
221911
+
Leu
CAG
[ENA]
¢þ
>WENV170564866
CZPY01000012
[CZPY] metagenome; PAHs-polluted Soil
230465
230538
+
Cys
GCA
[ENA]
¢þ
>WENV170564861
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
258167
258242
+
Ala
GGC
[ENA]
¢þ
>WENV170564873
CZPY01000014
[CZPY] metagenome; PAHs-polluted Soil
278967
279040
+
Gly
TCC
[ENA]
¢þ
>WENV170564880
CZPY01000027
[CZPY] metagenome; PAHs-polluted Soil
285274
285350
+
Arg
CCG
[ENA]
¢þ
>WENV170564867
CZPY01000012
[CZPY] metagenome; PAHs-polluted Soil
483265
483191
-
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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