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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CZQD] hydrothermal vent metagenome; ocean water
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170564956
CZQD01000028
[CZQD] hydrothermal vent metagenome; ocean water
1262
1186
-
Arg
CCT
[ENA]
¢þ
>WENV170564964
CZQD01000035
[CZQD] hydrothermal vent metagenome; ocean water
2073
1987
-
Leu
CAG
[ENA]
¢þ
>WENV170564963
CZQD01000035
[CZQD] hydrothermal vent metagenome; ocean water
2378
2305
-
Gly
TCC
[ENA]
¢þ
>WENV170564941
CZQD01000001
[CZQD] hydrothermal vent metagenome; ocean water
2409
2334
-
Val
TAC
[ENA]
¢þ
>WENV170564962
CZQD01000035
[CZQD] hydrothermal vent metagenome; ocean water
2507
2423
-
Tyr
GTA
[ENA]
¢þ
>WENV170564974
CZQD01000048
[CZQD] hydrothermal vent metagenome; ocean water
2876
2787
-
Ser
GCT
[ENA]
¢þ
>WENV170564959
CZQD01000031
[CZQD] hydrothermal vent metagenome; ocean water
3765
3689
-
Met
CAT
[ENA]
¢þ
>WENV170564969
CZQD01000045
[CZQD] hydrothermal vent metagenome; ocean water
4353
4264
-
Ser
CGA
[ENA]
¢þ
>WENV170564961
CZQD01000034
[CZQD] hydrothermal vent metagenome; ocean water
5594
5518
-
Met
CAT
[ENA]
¢þ
>WENV170564951
CZQD01000018
[CZQD] hydrothermal vent metagenome; ocean water
5718
5642
-
Met
CAT
[ENA]
¢þ
>WENV170564958
CZQD01000031
[CZQD] hydrothermal vent metagenome; ocean water
7247
7172
-
Ala
TGC
[ENA]
¢þ
>WENV170564953
CZQD01000020
[CZQD] hydrothermal vent metagenome; ocean water
7251
7175
-
Arg
CCG
[ENA]
¢þ
>WENV170564957
CZQD01000031
[CZQD] hydrothermal vent metagenome; ocean water
7380
7304
-
Ile
GAT
[ENA]
¢þ
>WENV170564947
CZQD01000014
[CZQD] hydrothermal vent metagenome; ocean water
7578
7654
+
Pro
GGG
[ENA]
¢þ
>WENV170564952
CZQD01000020
[CZQD] hydrothermal vent metagenome; ocean water
11745
11819
+
Val
GAC
[ENA]
¢þ
>WENV170564967
CZQD01000045
[CZQD] hydrothermal vent metagenome; ocean water
13491
13567
+
Pro
TGG
[ENA]
¢þ
>WENV170564968
CZQD01000045
[CZQD] hydrothermal vent metagenome; ocean water
13925
14001
+
Arg
TCT
[ENA]
¢þ
>WENV170564950
CZQD01000017
[CZQD] hydrothermal vent metagenome; ocean water
16920
16994
+
Gln
TTG
[ENA]
¢þ
>WENV170564970
CZQD01000047
[CZQD] hydrothermal vent metagenome; ocean water
20358
20432
+
Val
CAC
[ENA]
¢þ
>WENV170564942
CZQD01000002
[CZQD] hydrothermal vent metagenome; ocean water
27157
27231
+
Glu
TTC
[ENA]
¢þ
>WENV170564975
CZQD01000050
[CZQD] hydrothermal vent metagenome; ocean water
28482
28558
+
Arg
ACG
[ENA]
¢þ
>WENV170564940
CZQD01000001
[CZQD] hydrothermal vent metagenome; ocean water
31053
30969
-
Leu
GAG
[ENA]
¢þ
>WENV170564944
CZQD01000005
[CZQD] hydrothermal vent metagenome; ocean water
32670
32759
+
Ser
TGA
[ENA]
¢þ
>WENV170564945
CZQD01000005
[CZQD] hydrothermal vent metagenome; ocean water
35056
34972
-
Leu
TAG
[ENA]
¢þ
>WENV170564948
CZQD01000014
[CZQD] hydrothermal vent metagenome; ocean water
36292
36218
-
Phe
GAA
[ENA]
¢þ
>WENV170564943
CZQD01000004
[CZQD] hydrothermal vent metagenome; ocean water
41170
41096
-
Thr
GGT
[ENA]
¢þ
>WENV170564946
CZQD01000008
[CZQD] hydrothermal vent metagenome; ocean water
42039
41964
-
Trp
CCA
[ENA]
¢þ
>WENV170564939
CZQD01000001
[CZQD] hydrothermal vent metagenome; ocean water
43145
43059
-
Leu
TAA
[ENA]
¢þ
>WENV170564949
CZQD01000015
[CZQD] hydrothermal vent metagenome; ocean water
45779
45704
-
Ala
GGC
[ENA]
¢þ
>WENV170564966
CZQD01000039
[CZQD] hydrothermal vent metagenome; ocean water
51782
51708
-
Gly
GCC
[ENA]
¢þ
>WENV170564965
CZQD01000038
[CZQD] hydrothermal vent metagenome; ocean water
72275
72186
-
Ser
GGA
[ENA]
¢þ
>WENV170564954
CZQD01000028
[CZQD] hydrothermal vent metagenome; ocean water
85707
85782
+
Thr
CGT
[ENA]
¢þ
>WENV170564973
CZQD01000048
[CZQD] hydrothermal vent metagenome; ocean water
90211
90136
-
Lys
TTT
[ENA]
¢þ
>WENV170564971
CZQD01000048
[CZQD] hydrothermal vent metagenome; ocean water
120736
120809
+
Cys
GCA
[ENA]
¢þ
>WENV170564972
CZQD01000048
[CZQD] hydrothermal vent metagenome; ocean water
121135
121210
+
Asn
GTT
[ENA]
¢þ
>WENV170564955
CZQD01000028
[CZQD] hydrothermal vent metagenome; ocean water
130135
130221
+
Leu
CAA
[ENA]
¢þ
>WENV170564960
CZQD01000032
[CZQD] hydrothermal vent metagenome; ocean water
136465
136540
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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