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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[CZQE] hydrothermal vent metagenome; ocean water
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170564991
CZQE01000114
[CZQE] hydrothermal vent metagenome; ocean water
242
167
-
Val
TAC
[ENA]
¢þ
>WENV170565004
CZQE01000316
[CZQE] hydrothermal vent metagenome; ocean water
541
465
-
Arg
ACG
[ENA]
¢þ
>WENV170564994
CZQE01000141
[CZQE] hydrothermal vent metagenome; ocean water
832
918
+
Leu
GAG
[ENA]
¢þ
>WENV170564985
CZQE01000079
[CZQE] hydrothermal vent metagenome; ocean water
1122
1214
+
Ser
GCT
[ENA]
¢þ
>WENV170564980
CZQE01000050
[CZQE] hydrothermal vent metagenome; ocean water
1456
1380
-
Met
CAT
[ENA]
¢þ
>WENV170564981
CZQE01000051
[CZQE] hydrothermal vent metagenome; ocean water
1677
1601
-
Met
CAT
[ENA]
¢þ
>WENV170564983
CZQE01000068
[CZQE] hydrothermal vent metagenome; ocean water
1992
2067
+
Lys
TTT
[ENA]
¢þ
>WENV170565001
CZQE01000252
[CZQE] hydrothermal vent metagenome; ocean water
2093
2017
-
Pro
GGG
[ENA]
¢þ
>WENV170565007
CZQE01000389
[CZQE] hydrothermal vent metagenome; ocean water
2243
2317
+
Asn
GTT
[ENA]
¢þ
>WENV170564987
CZQE01000085
[CZQE] hydrothermal vent metagenome; ocean water
2821
2896
+
Ala
CGC
[ENA]
¢þ
>WENV170564976
CZQE01000008
[CZQE] hydrothermal vent metagenome; ocean water
3793
3717
-
Asp
GTC
[ENA]
¢þ
>WENV170565000
CZQE01000234
[CZQE] hydrothermal vent metagenome; ocean water
3906
3992
+
Leu
CAG
[ENA]
¢þ
>WENV170564986
CZQE01000080
[CZQE] hydrothermal vent metagenome; ocean water
3987
3912
-
Glu
TTC
[ENA]
¢þ
>WENV170564993
CZQE01000130
[CZQE] hydrothermal vent metagenome; ocean water
4011
3935
-
Met
CAT
[ENA]
¢þ
>WENV170565008
CZQE01000396
[CZQE] hydrothermal vent metagenome; ocean water
4076
4152
+
His
GTG
[ENA]
¢þ
>WENV170564997
CZQE01000164
[CZQE] hydrothermal vent metagenome; ocean water
4148
4074
-
Gly
GCC
[ENA]
¢þ
>WENV170564982
CZQE01000054
[CZQE] hydrothermal vent metagenome; ocean water
4374
4298
-
Pro
TGG
[ENA]
¢þ
>WENV170565009
CZQE01000398
[CZQE] hydrothermal vent metagenome; ocean water
4795
4721
-
Gln
TTG
[ENA]
¢þ
>WENV170564979
CZQE01000050
[CZQE] hydrothermal vent metagenome; ocean water
5147
5072
-
Ala
TGC
[ENA]
¢þ
>WENV170564978
CZQE01000050
[CZQE] hydrothermal vent metagenome; ocean water
5239
5163
-
Ile
GAT
[ENA]
¢þ
>WENV170565006
CZQE01000388
[CZQE] hydrothermal vent metagenome; ocean water
5625
5700
+
Thr
CGT
[ENA]
¢þ
>WENV170565010
CZQE01000409
[CZQE] hydrothermal vent metagenome; ocean water
6558
6482
-
Pro
CGG
[ENA]
¢þ
>WENV170564977
CZQE01000026
[CZQE] hydrothermal vent metagenome; ocean water
6739
6650
-
Ser
TGA
[ENA]
¢þ
>WENV170564996
CZQE01000161
[CZQE] hydrothermal vent metagenome; ocean water
7368
7295
-
Gly
CCC
[ENA]
¢þ
>WENV170564999
CZQE01000182
[CZQE] hydrothermal vent metagenome; ocean water
8081
8155
+
Val
CAC
[ENA]
¢þ
>WENV170565002
CZQE01000292
[CZQE] hydrothermal vent metagenome; ocean water
9885
9969
+
Leu
TAG
[ENA]
¢þ
>WENV170564995
CZQE01000154
[CZQE] hydrothermal vent metagenome; ocean water
11043
11133
+
Ser
GGA
[ENA]
¢þ
>WENV170564989
CZQE01000096
[CZQE] hydrothermal vent metagenome; ocean water
11794
11718
-
Arg
TCT
[ENA]
¢þ
>WENV170564984
CZQE01000073
[CZQE] hydrothermal vent metagenome; ocean water
13174
13098
-
Trp
CCA
[ENA]
¢þ
>WENV170565003
CZQE01000308
[CZQE] hydrothermal vent metagenome; ocean water
13554
13628
+
Val
GAC
[ENA]
¢þ
>WENV170564988
CZQE01000096
[CZQE] hydrothermal vent metagenome; ocean water
15479
15405
-
Cys
GCA
[ENA]
¢þ
>WENV170564998
CZQE01000174
[CZQE] hydrothermal vent metagenome; ocean water
16687
16612
-
Phe
GAA
[ENA]
¢þ
>WENV170564990
CZQE01000103
[CZQE] hydrothermal vent metagenome; ocean water
25125
25198
+
Gly
TCC
[ENA]
¢þ
>WENV170564992
CZQE01000118
[CZQE] hydrothermal vent metagenome; ocean water
29976
29902
-
Thr
GGT
[ENA]
¢þ
>WENV170565005
CZQE01000362
[CZQE] hydrothermal vent metagenome; ocean water
30689
30605
-
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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