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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[CZRL] hydrothermal vent metagenome; ocean water
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565018
CZRL01000007
[CZRL] hydrothermal vent metagenome; ocean water
212
136
-
Met
CAT
[ENA]
¢þ
>WENV170565035
CZRL01000092
[CZRL] hydrothermal vent metagenome; ocean water
278
188
-
Ser
GGA
[ENA]
¢þ
>WENV170565041
CZRL01000107
[CZRL] hydrothermal vent metagenome; ocean water
847
920
+
Gly
CCC
[ENA]
¢þ
>WENV170565015
CZRL01000005
[CZRL] hydrothermal vent metagenome; ocean water
1593
1517
-
Arg
ACG
[ENA]
¢þ
>WENV170565016
CZRL01000006
[CZRL] hydrothermal vent metagenome; ocean water
1719
1644
-
Ala
CGC
[ENA]
¢þ
>WENV170565014
CZRL01000005
[CZRL] hydrothermal vent metagenome; ocean water
1786
1694
-
Ser
GCT
[ENA]
¢þ
>WENV170565027
CZRL01000070
[CZRL] hydrothermal vent metagenome; ocean water
2558
2467
-
Ser
TGA
[ENA]
¢þ
>WENV170565024
CZRL01000041
[CZRL] hydrothermal vent metagenome; ocean water
2593
2518
-
Ala
TGC
[ENA]
¢þ
>WENV170565023
CZRL01000041
[CZRL] hydrothermal vent metagenome; ocean water
2700
2624
-
Ile
GAT
[ENA]
¢þ
>WENV170565025
CZRL01000052
[CZRL] hydrothermal vent metagenome; ocean water
3497
3421
-
Arg
TCG
[ENA]
¢þ
>WENV170565017
CZRL01000007
[CZRL] hydrothermal vent metagenome; ocean water
3844
3770
-
Gln
TTG
[ENA]
¢þ
>WENV170565019
CZRL01000012
[CZRL] hydrothermal vent metagenome; ocean water
4303
4378
+
Val
TAC
[ENA]
¢þ
>WENV170565020
CZRL01000012
[CZRL] hydrothermal vent metagenome; ocean water
4422
4498
+
Asp
GTC
[ENA]
¢þ
>WENV170565034
CZRL01000092
[CZRL] hydrothermal vent metagenome; ocean water
5709
5620
-
Ser
CGA
[ENA]
¢þ
>WENV170565021
CZRL01000035
[CZRL] hydrothermal vent metagenome; ocean water
6121
6046
-
Phe
GAA
[ENA]
¢þ
>WENV170565028
CZRL01000084
[CZRL] hydrothermal vent metagenome; ocean water
11211
11286
+
Thr
TGT
[ENA]
¢þ
>WENV170565029
CZRL01000084
[CZRL] hydrothermal vent metagenome; ocean water
11572
11656
+
Tyr
GTA
[ENA]
¢þ
>WENV170565030
CZRL01000084
[CZRL] hydrothermal vent metagenome; ocean water
11737
11810
+
Gly
TCC
[ENA]
¢þ
>WENV170565031
CZRL01000084
[CZRL] hydrothermal vent metagenome; ocean water
11823
11898
+
Thr
GGT
[ENA]
¢þ
>WENV170565013
CZRL01000005
[CZRL] hydrothermal vent metagenome; ocean water
12891
12815
-
Glu
TTC
[ENA]
¢þ
>WENV170565012
CZRL01000005
[CZRL] hydrothermal vent metagenome; ocean water
12973
12898
-
Ala
GGC
[ENA]
¢þ
>WENV170565032
CZRL01000084
[CZRL] hydrothermal vent metagenome; ocean water
13207
13282
+
Trp
CCA
[ENA]
¢þ
>WENV170565022
CZRL01000041
[CZRL] hydrothermal vent metagenome; ocean water
13870
13797
-
Gln
CTG
[ENA]
¢þ
>WENV170565011
CZRL01000005
[CZRL] hydrothermal vent metagenome; ocean water
14518
14592
+
Val
CAC
[ENA]
¢þ
>WENV170565033
CZRL01000084
[CZRL] hydrothermal vent metagenome; ocean water
29797
29872
+
Trp
CCA
[ENA]
¢þ
>WENV170565026
CZRL01000059
[CZRL] hydrothermal vent metagenome; ocean water
36564
36478
-
Leu
CAA
[ENA]
¢þ
>WENV170565036
CZRL01000104
[CZRL] hydrothermal vent metagenome; ocean water
84410
84496
+
Leu
CAG
[ENA]
¢þ
>WENV170565040
CZRL01000104
[CZRL] hydrothermal vent metagenome; ocean water
106555
106479
-
Met
CAT
[ENA]
¢þ
>WENV170565039
CZRL01000104
[CZRL] hydrothermal vent metagenome; ocean water
117643
117568
-
Thr
CGT
[ENA]
¢þ
>WENV170565037
CZRL01000104
[CZRL] hydrothermal vent metagenome; ocean water
127141
127217
+
Pro
CGG
[ENA]
¢þ
>WENV170565038
CZRL01000104
[CZRL] hydrothermal vent metagenome; ocean water
278702
278776
+
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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