This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[CZRM] hydrothermal vent metagenome; ocean water
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565070
CZRM01000295
[CZRM] hydrothermal vent metagenome; ocean water
86
10
-
Ala
CGC
[ENA]
¢þ
>WENV170565055
CZRM01000139
[CZRM] hydrothermal vent metagenome; ocean water
105
31
-
Val
CAC
[ENA]
¢þ
>WENV170565080
CZRM01000353
[CZRM] hydrothermal vent metagenome; ocean water
493
417
-
Met
CAT
[ENA]
¢þ
>WENV170565050
CZRM01000070
[CZRM] hydrothermal vent metagenome; ocean water
516
588
+
Arg
CCG
[ENA]
¢þ
>WENV170565079
CZRM01000353
[CZRM] hydrothermal vent metagenome; ocean water
570
497
-
Thr
GGT
[ENA]
¢þ
>WENV170565069
CZRM01000294
[CZRM] hydrothermal vent metagenome; ocean water
884
959
+
Lys
TTT
[ENA]
¢þ
>WENV170565076
CZRM01000350
[CZRM] hydrothermal vent metagenome; ocean water
1327
1251
-
Arg
ACG
[ENA]
¢þ
>WENV170565078
CZRM01000353
[CZRM] hydrothermal vent metagenome; ocean water
1365
1281
-
Tyr
GTA
[ENA]
¢þ
>WENV170565075
CZRM01000350
[CZRM] hydrothermal vent metagenome; ocean water
1489
1397
-
Ser
GCT
[ENA]
¢þ
>WENV170565074
CZRM01000350
[CZRM] hydrothermal vent metagenome; ocean water
1551
1638
+
Ser
TGA
[ENA]
¢þ
>WENV170565052
CZRM01000077
[CZRM] hydrothermal vent metagenome; ocean water
1600
1526
-
Val
GAC
[ENA]
¢þ
>WENV170565071
CZRM01000297
[CZRM] hydrothermal vent metagenome; ocean water
2013
2088
+
Thr
CGT
[ENA]
¢þ
>WENV170565046
CZRM01000062
[CZRM] hydrothermal vent metagenome; ocean water
2120
2046
-
Ile
GAT
[ENA]
¢þ
>WENV170565072
CZRM01000319
[CZRM] hydrothermal vent metagenome; ocean water
2355
2431
+
Ala
TGC
[ENA]
¢þ
>WENV170565051
CZRM01000077
[CZRM] hydrothermal vent metagenome; ocean water
2378
2301
-
Cys
GCA
[ENA]
¢þ
>WENV170565044
CZRM01000036
[CZRM] hydrothermal vent metagenome; ocean water
2769
2842
+
Ala
GGC
[ENA]
¢þ
>WENV170565082
CZRM01000410
[CZRM] hydrothermal vent metagenome; ocean water
3530
3455
-
Met
CAT
[ENA]
¢þ
>WENV170565047
CZRM01000064
[CZRM] hydrothermal vent metagenome; ocean water
4889
4963
+
Thr
TGT
[ENA]
¢þ
>WENV170565049
CZRM01000069
[CZRM] hydrothermal vent metagenome; ocean water
5956
5880
-
Arg
CCT
[ENA]
¢þ
>WENV170565056
CZRM01000150
[CZRM] hydrothermal vent metagenome; ocean water
6274
6347
+
Gly
CCC
[ENA]
¢þ
>WENV170565054
CZRM01000098
[CZRM] hydrothermal vent metagenome; ocean water
6290
6364
+
Thr
TGT
[ENA]
¢þ
>WENV170565059
CZRM01000190
[CZRM] hydrothermal vent metagenome; ocean water
7014
7091
+
Cys
GCA
[ENA]
¢þ
>WENV170565063
CZRM01000226
[CZRM] hydrothermal vent metagenome; ocean water
7542
7466
-
Pro
CGG
[ENA]
¢þ
>WENV170565060
CZRM01000190
[CZRM] hydrothermal vent metagenome; ocean water
7786
7862
+
Val
GAC
[ENA]
¢þ
>WENV170565042
CZRM01000008
[CZRM] hydrothermal vent metagenome; ocean water
8662
8737
+
Glu
TTC
[ENA]
¢þ
>WENV170565043
CZRM01000008
[CZRM] hydrothermal vent metagenome; ocean water
8797
8874
+
Asp
GTC
[ENA]
¢þ
>WENV170565083
CZRM01000414
[CZRM] hydrothermal vent metagenome; ocean water
8919
8994
+
Met
CAT
[ENA]
¢þ
>WENV170565067
CZRM01000257
[CZRM] hydrothermal vent metagenome; ocean water
8921
8996
+
Gln
TTG
[ENA]
¢þ
>WENV170565073
CZRM01000319
[CZRM] hydrothermal vent metagenome; ocean water
11065
11151
+
Leu
CAG
[ENA]
¢þ
>WENV170565068
CZRM01000272
[CZRM] hydrothermal vent metagenome; ocean water
13236
13311
+
Asn
GTT
[ENA]
¢þ
>WENV170565065
CZRM01000253
[CZRM] hydrothermal vent metagenome; ocean water
14531
14617
+
Leu
CAA
[ENA]
¢þ
>WENV170565061
CZRM01000205
[CZRM] hydrothermal vent metagenome; ocean water
17310
17386
+
Ala
CGC
[ENA]
¢þ
>WENV170565048
CZRM01000064
[CZRM] hydrothermal vent metagenome; ocean water
23732
23659
-
Thr
CGT
[ENA]
¢þ
>WENV170565058
CZRM01000159
[CZRM] hydrothermal vent metagenome; ocean water
26060
25983
-
Asp
GTC
[ENA]
¢þ
>WENV170565057
CZRM01000159
[CZRM] hydrothermal vent metagenome; ocean water
26166
26091
-
Glu
TTC
[ENA]
¢þ
>WENV170565064
CZRM01000233
[CZRM] hydrothermal vent metagenome; ocean water
26331
26256
-
Gly
GCC
[ENA]
¢þ
>WENV170565045
CZRM01000061
[CZRM] hydrothermal vent metagenome; ocean water
28257
28345
+
Leu
TAA
[ENA]
¢þ
>WENV170565081
CZRM01000372
[CZRM] hydrothermal vent metagenome; ocean water
28616
28542
-
Arg
CCG
[ENA]
¢þ
>WENV170565066
CZRM01000253
[CZRM] hydrothermal vent metagenome; ocean water
35312
35396
+
Leu
GAG
[ENA]
¢þ
>WENV170565062
CZRM01000215
[CZRM] hydrothermal vent metagenome; ocean water
50981
50903
-
Arg
CCT
[ENA]
¢þ
>WENV170565053
CZRM01000093
[CZRM] hydrothermal vent metagenome; ocean water
71878
71954
+
Met
CAT
[ENA]
¢þ
>WENV170565077
CZRM01000353
[CZRM] hydrothermal vent metagenome; ocean water
72116
72191
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK