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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CZVZ] metagenome; unknown
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180000110
CZVZ01000324
[CZVZ] metagenome; unknown
70
145
+
Lys
CTT
[ENA]
¢þ
>WENV180000112
CZVZ01000660
[CZVZ] metagenome; unknown
84
7
-
Arg
CCG
[ENA]
¢þ
>WENV180000116
CZVZ01001145
[CZVZ] metagenome; unknown
88
1
-
Ser
CGA
[ENA]
¢þ
>WENV180000125
CZVZ01001498
[CZVZ] metagenome; unknown
99
7
-
Ser
GCT
[ENA]
¢þ
>WENV180000103
CZVZ01000107
[CZVZ] metagenome; unknown
107
31
-
fMet
CAT
[ENA]
¢þ
>WENV180000111
CZVZ01000548
[CZVZ] metagenome; unknown
132
58
-
Val
CAC
[ENA]
¢þ
>WENV180000107
CZVZ01000143
[CZVZ] metagenome; unknown
223
298
+
Trp
CCA
[ENA]
¢þ
>WENV180000102
CZVZ01000107
[CZVZ] metagenome; unknown
259
184
-
Thr
TGT
[ENA]
¢þ
>WENV180000115
CZVZ01001032
[CZVZ] metagenome; unknown
294
370
+
Gln
TTG
[ENA]
¢þ
>WENV180000114
CZVZ01000901
[CZVZ] metagenome; unknown
317
401
+
Leu
CAA
[ENA]
¢þ
>WENV180000104
CZVZ01000124
[CZVZ] metagenome; unknown
430
355
-
Ala
CGC
[ENA]
¢þ
>WENV180000100
CZVZ01000040
[CZVZ] metagenome; unknown
601
527
-
Gly
CCC
[ENA]
¢þ
>WENV180000108
CZVZ01000217
[CZVZ] metagenome; unknown
627
703
+
Val
GAC
[ENA]
¢þ
>WENV180000129
CZVZ01002053
[CZVZ] metagenome; unknown
659
584
-
Ala
TGC
[ENA]
¢þ
>WENV180000137
CZVZ01002273
[CZVZ] metagenome; unknown
696
772
+
Gln
TTG
[ENA]
¢þ
>WENV180000128
CZVZ01002053
[CZVZ] metagenome; unknown
758
682
-
Ile
GAT
[ENA]
¢þ
>WENV180000121
CZVZ01001351
[CZVZ] metagenome; unknown
830
756
-
Arg
CCT
[ENA]
¢þ
>WENV180000101
CZVZ01000095
[CZVZ] metagenome; unknown
958
882
-
Asp
GTC
[ENA]
¢þ
>WENV180000122
CZVZ01001417
[CZVZ] metagenome; unknown
994
907
-
Ser
TGA
[ENA]
¢þ
>WENV180000105
CZVZ01000142
[CZVZ] metagenome; unknown
1066
1139
+
Gly
TCC
[ENA]
¢þ
>WENV180000109
CZVZ01000220
[CZVZ] metagenome; unknown
1076
1152
+
Pro
GGG
[ENA]
¢þ
>WENV180000106
CZVZ01000142
[CZVZ] metagenome; unknown
1170
1244
+
Thr
GGT
[ENA]
¢þ
>WENV180000117
CZVZ01001231
[CZVZ] metagenome; unknown
1179
1104
-
Phe
GAA
[ENA]
¢þ
>WENV180000141
CZVZ01002394
[CZVZ] metagenome; unknown
1248
1334
+
Leu
CAG
[ENA]
¢þ
>WENV180000127
CZVZ01001775
[CZVZ] metagenome; unknown
1536
1612
+
Met
CAT
[ENA]
¢þ
>WENV180000126
CZVZ01001690
[CZVZ] metagenome; unknown
1574
1490
-
Leu
CAG
[ENA]
¢þ
>WENV180000140
CZVZ01002315
[CZVZ] metagenome; unknown
1896
1821
-
Glu
TTC
[ENA]
¢þ
>WENV180000139
CZVZ01002315
[CZVZ] metagenome; unknown
1979
1904
-
Ala
GGC
[ENA]
¢þ
>WENV180000136
CZVZ01002252
[CZVZ] metagenome; unknown
2125
2200
+
His
GTG
[ENA]
¢þ
>WENV180000118
CZVZ01001240
[CZVZ] metagenome; unknown
2447
2523
+
Pro
TGG
[ENA]
¢þ
>WENV180000119
CZVZ01001240
[CZVZ] metagenome; unknown
2551
2627
+
Arg
TCT
[ENA]
¢þ
>WENV180000120
CZVZ01001240
[CZVZ] metagenome; unknown
2671
2746
+
His
GTG
[ENA]
¢þ
>WENV180000138
CZVZ01002287
[CZVZ] metagenome; unknown
3130
3054
-
Asp
GTC
[ENA]
¢þ
>WENV180000113
CZVZ01000738
[CZVZ] metagenome; unknown
3266
3182
-
Leu
GAG
[ENA]
¢þ
>WENV180000133
CZVZ01002179
[CZVZ] metagenome; unknown
3504
3579
+
Lys
TTT
[ENA]
¢þ
>WENV180000123
CZVZ01001488
[CZVZ] metagenome; unknown
3537
3612
+
Asn
GTT
[ENA]
¢þ
>WENV180000134
CZVZ01002179
[CZVZ] metagenome; unknown
3588
3663
+
Lys
CTT
[ENA]
¢þ
>WENV180000124
CZVZ01001488
[CZVZ] metagenome; unknown
3671
3746
+
Asn
GTT
[ENA]
¢þ
>WENV180000131
CZVZ01002111
[CZVZ] metagenome; unknown
4008
3932
-
Asn
GTT
[ENA]
¢þ
>WENV180000135
CZVZ01002181
[CZVZ] metagenome; unknown
4206
4131
-
Thr
TGT
[ENA]
¢þ
>WENV180000130
CZVZ01002104
[CZVZ] metagenome; unknown
4756
4831
+
Val
TAC
[ENA]
¢þ
>WENV180000132
CZVZ01002121
[CZVZ] metagenome; unknown
7946
7872
-
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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