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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FAOW] marine metagenome; seawater
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565118
FAOW01036693
[FAOW] marine metagenome; seawater
1
73
+
Arg
TCT
[ENA]
¢þ
>WENV170565109
FAOW01025233
[FAOW] marine metagenome; seawater
1
77
+
Asn
GTT
[ENA]
¢þ
>WENV170565108
FAOW01025213
[FAOW] marine metagenome; seawater
3
92
+
Ser
CGA
[ENA]
¢þ
>WENV170565127
FAOW01063564
[FAOW] marine metagenome; seawater
5
76
+
Ala
TGC
[ENA]
¢þ
>WENV170565120
FAOW01040539
[FAOW] marine metagenome; seawater
8
92
+
Leu
TAA
[ENA]
¢þ
>WENV170565110
FAOW01027176
[FAOW] marine metagenome; seawater
24
99
+
Glu
CTC
[ENA]
¢þ
>WENV170565098
FAOW01009172
[FAOW] marine metagenome; seawater
27
99
+
Glu
TTC
[ENA]
¢þ
>WENV170565125
FAOW01054718
[FAOW] marine metagenome; seawater
35
110
+
Arg
TCG
[ENA]
¢þ
>WENV170565128
FAOW01063996
[FAOW] marine metagenome; seawater
41
113
+
Arg
TCT
[ENA]
¢þ
>WENV170565130
FAOW01085427
[FAOW] marine metagenome; seawater
74
2
-
Glu
TTC
[ENA]
¢þ
>WENV170565129
FAOW01081030
[FAOW] marine metagenome; seawater
77
3
-
Asn
GTT
[ENA]
¢þ
>WENV170565104
FAOW01014285
[FAOW] marine metagenome; seawater
84
158
+
His
GTG
[ENA]
¢þ
>WENV170565113
FAOW01032324
[FAOW] marine metagenome; seawater
90
163
+
Gln
TTG
[ENA]
¢þ
>WENV170565117
FAOW01035881
[FAOW] marine metagenome; seawater
95
178
+
Tyr
GTA
[ENA]
¢þ
>WENV170565122
FAOW01047277
[FAOW] marine metagenome; seawater
101
173
+
Lys
TTT
[ENA]
¢þ
>WENV170565119
FAOW01037280
[FAOW] marine metagenome; seawater
101
174
+
Thr
TGT
[ENA]
¢þ
>WENV170565107
FAOW01019931
[FAOW] marine metagenome; seawater
106
176
+
Gly
TCC
[ENA]
¢þ
>WENV170565090
FAOW01002367
[FAOW] marine metagenome; seawater
107
182
+
Arg
TCT
[ENA]
¢þ
>WENV170565099
FAOW01009172
[FAOW] marine metagenome; seawater
111
186
+
Asn
GTT
[ENA]
¢þ
>WENV170565121
FAOW01040539
[FAOW] marine metagenome; seawater
112
186
+
Tyr
GTA
[ENA]
¢þ
>WENV170565102
FAOW01011151
[FAOW] marine metagenome; seawater
113
42
-
Ala
GGC
[ENA]
¢þ
>WENV170565106
FAOW01016823
[FAOW] marine metagenome; seawater
118
48
-
Gly
TCC
[ENA]
¢þ
>WENV170565105
FAOW01015267
[FAOW] marine metagenome; seawater
128
213
+
Leu
TAA
[ENA]
¢þ
>WENV170565126
FAOW01057958
[FAOW] marine metagenome; seawater
134
61
-
Gly
GCC
[ENA]
¢þ
>WENV170565124
FAOW01050672
[FAOW] marine metagenome; seawater
138
63
-
Met
CAT
[ENA]
¢þ
>WENV170565112
FAOW01027309
[FAOW] marine metagenome; seawater
141
67
-
Pro
TGG
[ENA]
¢þ
>WENV170565091
FAOW01002732
[FAOW] marine metagenome; seawater
149
220
+
Lys
TTT
[ENA]
¢þ
>WENV170565123
FAOW01050306
[FAOW] marine metagenome; seawater
158
85
-
Glu
TTC
[ENA]
¢þ
>WENV170565114
FAOW01032547
[FAOW] marine metagenome; seawater
160
86
-
Met
CAT
[ENA]
¢þ
>WENV170565116
FAOW01033213
[FAOW] marine metagenome; seawater
163
89
-
Val
TAC
[ENA]
¢þ
>WENV170565115
FAOW01032575
[FAOW] marine metagenome; seawater
175
90
-
Tyr
GTA
[ENA]
¢þ
>WENV170565103
FAOW01013686
[FAOW] marine metagenome; seawater
205
135
-
Cys
GCA
[ENA]
¢þ
>WENV170565089
FAOW01002269
[FAOW] marine metagenome; seawater
207
292
+
Leu
CAG
[ENA]
¢þ
>WENV170565111
FAOW01027309
[FAOW] marine metagenome; seawater
218
147
-
Asp
GTC
[ENA]
¢þ
>WENV170565092
FAOW01002732
[FAOW] marine metagenome; seawater
227
302
+
Ile
TAT
[ENA]
¢þ
>WENV170565100
FAOW01009172
[FAOW] marine metagenome; seawater
263
190
-
Gly
TCC
[ENA]
¢þ
>WENV170565094
FAOW01003131
[FAOW] marine metagenome; seawater
269
194
-
Lys
TTT
[ENA]
¢þ
>WENV170565101
FAOW01010103
[FAOW] marine metagenome; seawater
273
200
-
Gln
TTG
[ENA]
¢þ
>WENV170565086
FAOW01001244
[FAOW] marine metagenome; seawater
283
196
-
Leu
TAG
[ENA]
¢þ
>WENV170565095
FAOW01004710
[FAOW] marine metagenome; seawater
311
226
-
Tyr
GTA
[ENA]
¢þ
>WENV170565093
FAOW01002732
[FAOW] marine metagenome; seawater
322
395
+
Lys
CTT
[ENA]
¢þ
>WENV170565096
FAOW01006741
[FAOW] marine metagenome; seawater
377
305
-
Met
CAT
[ENA]
¢þ
>WENV170565097
FAOW01007555
[FAOW] marine metagenome; seawater
394
319
-
Ala
CGC
[ENA]
¢þ
>WENV170565085
FAOW01000980
[FAOW] marine metagenome; seawater
429
504
+
His
GTG
[ENA]
¢þ
>WENV170565088
FAOW01001622
[FAOW] marine metagenome; seawater
493
567
+
Ile
GAT
[ENA]
¢þ
>WENV170565084
FAOW01000181
[FAOW] marine metagenome; seawater
531
614
+
Ser
CGA
[ENA]
¢þ
>WENV170565087
FAOW01001395
[FAOW] marine metagenome; seawater
597
523
-
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK