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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FAOX] marine metagenome; seawater
HIT:
80 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170565150
FAOX01008098
[FAOX] marine metagenome; seawater
1
75
+
Trp
CCA
[ENA]
¢þ
>WENV170565209
FAOX01093641
[FAOX] marine metagenome; seawater
1
85
+
Leu
TAG
[ENA]
¢þ
>WENV170565176
FAOX01027317
[FAOX] marine metagenome; seawater
1
87
+
Ser
GCT
[ENA]
¢þ
>WENV170565210
FAOX01098780
[FAOX] marine metagenome; seawater
2
78
+
Arg
CCT
[ENA]
¢þ
>WENV170565208
FAOX01085305
[FAOX] marine metagenome; seawater
2
91
+
Ser
GGA
[ENA]
¢þ
>WENV170565207
FAOX01081596
[FAOX] marine metagenome; seawater
15
89
+
Arg
TCT
[ENA]
¢þ
>WENV170565188
FAOX01045082
[FAOX] marine metagenome; seawater
15
90
+
Asn
GTT
[ENA]
¢þ
>WENV170565164
FAOX01020477
[FAOX] marine metagenome; seawater
34
107
+
Ile
TAT
[ENA]
¢þ
>WENV170565203
FAOX01068883
[FAOX] marine metagenome; seawater
41
113
+
Val
TAC
[ENA]
¢þ
>WENV170565198
FAOX01060050
[FAOX] marine metagenome; seawater
44
115
+
Glu
CTC
[ENA]
¢þ
>WENV170565191
FAOX01050889
[FAOX] marine metagenome; seawater
56
128
+
Val
TAC
[ENA]
¢þ
>WENV170565160
FAOX01018109
[FAOX] marine metagenome; seawater
62
134
+
Arg
CCG
[ENA]
¢þ
>WENV170565202
FAOX01064229
[FAOX] marine metagenome; seawater
67
137
+
Gly
TCC
[ENA]
¢þ
>WENV170565172
FAOX01023234
[FAOX] marine metagenome; seawater
68
139
+
Thr
TGT
[ENA]
¢þ
>WENV170565185
FAOX01041140
[FAOX] marine metagenome; seawater
69
140
+
Gln
TTG
[ENA]
¢þ
>WENV170565200
FAOX01062198
[FAOX] marine metagenome; seawater
72
1
-
Cys
GCA
[ENA]
¢þ
>WENV170565199
FAOX01061686
[FAOX] marine metagenome; seawater
72
158
+
Leu
TAA
[ENA]
¢þ
>WENV170565192
FAOX01052266
[FAOX] marine metagenome; seawater
74
1
-
Gly
TCC
[ENA]
¢þ
>WENV170565159
FAOX01017356
[FAOX] marine metagenome; seawater
76
149
+
Ile
TAT
[ENA]
¢þ
>WENV170565165
FAOX01020721
[FAOX] marine metagenome; seawater
78
5
-
Trp
CCA
[ENA]
¢þ
>WENV170565137
FAOX01001993
[FAOX] marine metagenome; seawater
82
7
-
Thr
TGT
[ENA]
¢þ
>WENV170565206
FAOX01075467
[FAOX] marine metagenome; seawater
82
11
-
Val
TAC
[ENA]
¢þ
>WENV170565201
FAOX01064224
[FAOX] marine metagenome; seawater
87
16
-
Gly
TCC
[ENA]
¢þ
>WENV170565204
FAOX01070167
[FAOX] marine metagenome; seawater
87
16
-
Val
TAC
[ENA]
¢þ
>WENV170565187
FAOX01044833
[FAOX] marine metagenome; seawater
90
164
+
Gln
TTG
[ENA]
¢þ
>WENV170565205
FAOX01073468
[FAOX] marine metagenome; seawater
91
17
-
Arg
TCG
[ENA]
¢þ
>WENV170565168
FAOX01021348
[FAOX] marine metagenome; seawater
98
28
-
Gly
TCC
[ENA]
¢þ
>WENV170565190
FAOX01047084
[FAOX] marine metagenome; seawater
100
24
-
Pro
TGG
[ENA]
¢þ
>WENV170565179
FAOX01030307
[FAOX] marine metagenome; seawater
106
32
-
Glu
TTC
[ENA]
¢þ
>WENV170565134
FAOX01001033
[FAOX] marine metagenome; seawater
108
27
-
Leu
TAA
[ENA]
¢þ
>WENV170565196
FAOX01056858
[FAOX] marine metagenome; seawater
113
183
+
Cys
GCA
[ENA]
¢þ
>WENV170565195
FAOX01055892
[FAOX] marine metagenome; seawater
114
188
+
Thr
AGT
[ENA]
¢þ
>WENV170565197
FAOX01057854
[FAOX] marine metagenome; seawater
115
42
-
Asn
GTT
[ENA]
¢þ
>WENV170565194
FAOX01055659
[FAOX] marine metagenome; seawater
115
190
+
Thr
GGT
[ENA]
¢þ
>WENV170565163
FAOX01020283
[FAOX] marine metagenome; seawater
122
50
-
Gly
TCC
[ENA]
¢þ
>WENV170565189
FAOX01045933
[FAOX] marine metagenome; seawater
133
206
+
Cys
GCA
[ENA]
¢þ
>WENV170565136
FAOX01001663
[FAOX] marine metagenome; seawater
133
217
+
Leu
TAA
[ENA]
¢þ
>WENV170565193
FAOX01054587
[FAOX] marine metagenome; seawater
136
50
-
Leu
TAA
[ENA]
¢þ
>WENV170565131
FAOX01000079
[FAOX] marine metagenome; seawater
136
65
-
Gln
TTG
[ENA]
¢þ
>WENV170565155
FAOX01013231
[FAOX] marine metagenome; seawater
139
211
+
Gln
TTG
[ENA]
¢þ
>WENV170565180
FAOX01031810
[FAOX] marine metagenome; seawater
146
71
-
Gln
TTG
[ENA]
¢þ
>WENV170565149
FAOX01007839
[FAOX] marine metagenome; seawater
150
63
-
Ser
TGA
[ENA]
¢þ
>WENV170565148
FAOX01006454
[FAOX] marine metagenome; seawater
150
76
-
His
GTG
[ENA]
¢þ
>WENV170565178
FAOX01030254
[FAOX] marine metagenome; seawater
160
88
-
Gln
TTG
[ENA]
¢þ
>WENV170565174
FAOX01026874
[FAOX] marine metagenome; seawater
168
240
+
Val
AAC
[ENA]
¢þ
>WENV170565157
FAOX01013827
[FAOX] marine metagenome; seawater
169
245
+
Asp
GTC
[ENA]
¢þ
>WENV170565183
FAOX01038606
[FAOX] marine metagenome; seawater
170
246
+
Asp
GTC
[ENA]
¢þ
>WENV170565182
FAOX01036956
[FAOX] marine metagenome; seawater
183
113
-
Gly
TCC
[ENA]
¢þ
>WENV170565133
FAOX01001033
[FAOX] marine metagenome; seawater
184
110
-
Glu
TTC
[ENA]
¢þ
>WENV170565177
FAOX01027991
[FAOX] marine metagenome; seawater
185
113
-
Val
CAC
[ENA]
¢þ
>WENV170565138
FAOX01002038
[FAOX] marine metagenome; seawater
199
126
-
Ala
TGC
[ENA]
¢þ
>WENV170565141
FAOX01003119
[FAOX] marine metagenome; seawater
203
130
-
Cys
GCA
[ENA]
¢þ
>WENV170565173
FAOX01024768
[FAOX] marine metagenome; seawater
221
150
-
Thr
TGT
[ENA]
¢þ
>WENV170565161
FAOX01019898
[FAOX] marine metagenome; seawater
223
300
+
Val
GAC
[ENA]
¢þ
>WENV170565181
FAOX01033303
[FAOX] marine metagenome; seawater
224
149
-
Gly
TCC
[ENA]
¢þ
>WENV170565184
FAOX01039815
[FAOX] marine metagenome; seawater
226
154
-
Arg
TCT
[ENA]
¢þ
>WENV170565167
FAOX01021348
[FAOX] marine metagenome; seawater
232
147
-
Tyr
GTA
[ENA]
¢þ
>WENV170565186
FAOX01043656
[FAOX] marine metagenome; seawater
243
171
-
Trp
CCA
[ENA]
¢þ
>WENV170565175
FAOX01026874
[FAOX] marine metagenome; seawater
244
315
+
Glu
TTC
[ENA]
¢þ
>WENV170565151
FAOX01009165
[FAOX] marine metagenome; seawater
244
318
+
Gly
TCC
[ENA]
¢þ
>WENV170565145
FAOX01004501
[FAOX] marine metagenome; seawater
247
176
-
Glu
CTC
[ENA]
¢þ
>WENV170565171
FAOX01023090
[FAOX] marine metagenome; seawater
254
328
+
Gly
TCC
[ENA]
¢þ
>WENV170565132
FAOX01001033
[FAOX] marine metagenome; seawater
260
186
-
Ile
GAT
[ENA]
¢þ
>WENV170565170
FAOX01022940
[FAOX] marine metagenome; seawater
264
337
+
Asp
GTC
[ENA]
¢þ
>WENV170565169
FAOX01022821
[FAOX] marine metagenome; seawater
268
195
-
Gly
TCC
[ENA]
¢þ
>WENV170565158
FAOX01016596
[FAOX] marine metagenome; seawater
280
354
+
Ile
TAT
[ENA]
¢þ
>WENV170565166
FAOX01021084
[FAOX] marine metagenome; seawater
295
221
-
Gly
GCC
[ENA]
¢þ
>WENV170565153
FAOX01011600
[FAOX] marine metagenome; seawater
306
379
+
Gln
TTG
[ENA]
¢þ
>WENV170565162
FAOX01020283
[FAOX] marine metagenome; seawater
313
241
-
Gly
TCC
[ENA]
¢þ
>WENV170565144
FAOX01003373
[FAOX] marine metagenome; seawater
350
439
+
Ser
TGA
[ENA]
¢þ
>WENV170565154
FAOX01012057
[FAOX] marine metagenome; seawater
352
424
+
Gln
TTG
[ENA]
¢þ
>WENV170565156
FAOX01013781
[FAOX] marine metagenome; seawater
354
428
+
Arg
ACG
[ENA]
¢þ
>WENV170565152
FAOX01010638
[FAOX] marine metagenome; seawater
383
309
-
His
GTG
[ENA]
¢þ
>WENV170565140
FAOX01002623
[FAOX] marine metagenome; seawater
406
479
+
Trp
CCA
[ENA]
¢þ
>WENV170565146
FAOX01005340
[FAOX] marine metagenome; seawater
413
338
-
Asn
GTT
[ENA]
¢þ
>WENV170565139
FAOX01002080
[FAOX] marine metagenome; seawater
414
339
-
Thr
GGT
[ENA]
¢þ
>WENV170565143
FAOX01003203
[FAOX] marine metagenome; seawater
421
350
-
Gly
TCC
[ENA]
¢þ
>WENV170565142
FAOX01003149
[FAOX] marine metagenome; seawater
479
551
+
Gly
TCC
[ENA]
¢þ
>WENV170565147
FAOX01006339
[FAOX] marine metagenome; seawater
549
476
-
Asn
GTT
[ENA]
¢þ
>WENV170565135
FAOX01001585
[FAOX] marine metagenome; seawater
610
686
+
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK